RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1242190", tax_clade = "Sar" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1242190 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27217865 27217865 PRJNA1242190_S_NODE_5182_length_361_cov_1.083333_g5175_i0 PRJNA1242190 5182 361 1.083333 3.91083213 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 156 9.17e-46   NR AFJ45055.1 5874 g5175 i0 63.3 8.88365650969529 120 43 99.7 1 1 360 2 120 AFJ45055.1 ribosomal protein S8, partial [Theileria annulata] diamond 3207 157 0.993630573248408 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Theileriidae Theileria Theileria annulata
27565436 27565436 PRJNA1242190_S_NODE_8124_length_299_cov_3.522124_g8117_i0 PRJNA1242190 8124 299 3.522124 10.53115076 Plasmodium 5820 SAR_Eukaryotes SAR_Eukaryotes 66.6 1.78e-10   NR EWC86765.1 5843 g8117 i0 44.3 4.75585284280936 79 41 78.3 2 273 40 212 288 EWC86765.1 hypothetical protein PFNF54_04318 [Plasmodium falciparum NF54] diamond 1422 66.6 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium falciparum
28968437 28968437 PRJNA1242190_S_NODE_4248_length_391_cov_4.393082_g4241_i0 PRJNA1242190 4248 391 4.393082 17.17695062 Neospora caninum Liverpool 572307 SAR_Eukaryotes SAR_Eukaryotes 133 1.83e-37   NR XP_003884403.1 572307 g4241 i0 58.1 3.19181585677749 105 44 80.6 0 5 319 11 115 XP_003884403.1 hypothetical protein NCLIV_048030 [Neospora caninum Liverpool] diamond 1248 133 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Neospora Neospora caninum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;