RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1242190", tax_clade = "Discoba" and tax_phylum = "Heterolobosea"

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tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 2 ✖

tax_clade 1

  • Discoba · 2 ✖

bioproject 1

  • PRJNA1242190 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26965066 26965066 PRJNA1242190_S_NODE_6042_length_338_cov_4.354717_g6035_i0 PRJNA1242190 6042 338 4.354717 14.71894346 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 63.9 3.95e-9   NR XP_002673387.1 5762 g6035 i0 52.5 1.16272189349112 61 29 54.1 0 320 138 330 390 XP_002673387.1 uncharacterized protein NAEGRDRAFT_80960 [Naegleria gruberi] diamond 393 63.9 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
27989651 27989651 PRJNA1242190_S_NODE_9745_length_276_cov_1.605911_g9738_i0 PRJNA1242190 9745 276 1.605911 4.43231436 Naegleria lovaniensis 51637 Heterolobosea other_Eukaryota 110 7.250000000000001e-27   NR XP_044551175.1 51637 g9738 i0 55.4 2 92 41 100 0 276 1 250 341 XP_044551175.1 uncharacterized protein C9374_001515 [Naegleria lovaniensis] diamond 552 110 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria lovaniensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;