RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

8 rows where bioproject = "PRJNA1241156", tax_phylum = "Planctomycetota" and tax_superkingdom = "Bacteria"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

  • Bacteria · 8 ✖

tax_phylum 1

  • Planctomycetota · 8 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1241156 · 8 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29536680 29536680 PRJNA1241156_S_NODE_76790_length_200_cov_6.535032_g76330_i0 PRJNA1241156 76790 200 6.535032 13.070064 Planctomycetota bacterium 2026780 Bacteria Bacteria 42.4 0.0296   NR HYG74173.1 2026780 g76330 i0 36 0.75 50 31 73.5 1 194 48 579 628 HYG74173.1 L-glutamate gamma-semialdehyde dehydrogenase [Planctomycetota bacterium] diamond 150 42.4 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
29631085 29631085 PRJNA1241156_S_NODE_15870_length_384_cov_3.639296_g15410_i0 PRJNA1241156 15870 384 3.639296 13.97489664 Planctomycetaceae bacterium 2026779 Bacteria Bacteria 48.1 0.00217   NR MBV8129862.1 2026779 g15410 i0 38.8 0.6640625 85 49 66.4 1 302 48 81 162 MBV8129862.1 iron ABC transporter permease [Planctomycetaceae bacterium] diamond 255 48.1 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae   Planctomycetaceae bacterium
29884190 29884190 PRJNA1241156_S_NODE_64071_length_245_cov_2.881188_g63611_i0 PRJNA1241156 64071 245 2.881188 7.0589106 Candidatus Scalinduaceae bacterium 3015208 Bacteria Bacteria 42.7 0.0374   NR MFQ5962738.1 3015208 g63611 i0 32.8 0.820408163265306 67 34 68.6 2 209 42 74 140 MFQ5962738.1 dihydrolipoyl dehydrogenase family protein [Candidatus Scalinduaceae bacterium] diamond 201 42.7 1 Bacteria PVC group Pseudomonadati Planctomycetota Candidatus Brocadiia Candidatus Brocadiales Candidatus Scalinduaceae   Candidatus Scalinduaceae bacterium
30199713 30199713 PRJNA1241156_S_NODE_49052_length_278_cov_3.838298_g48592_i0 PRJNA1241156 49052 278 3.838298 10.67046844 Planctomycetota bacterium 2026780 Bacteria Bacteria 43.1 0.0404   NR MDE1890470.1 2026780 g48592 i0 36.1 0.658273381294964 61 33 65.8 1 204 22 118 172 MDE1890470.1 NAD(P)/FAD-dependent oxidoreductase [Planctomycetota bacterium] diamond 183 43.1 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
30263420 30263420 PRJNA1241156_S_NODE_30692_length_328_cov_6.301754_g30232_i0 PRJNA1241156 30692 328 6.301754 20.66975312 Planctomycetes bacterium MalM25 2527998 Bacteria Bacteria 43.9 0.0348   NR QDT68364.1 2527998 g30232 i0 38.6 0.640243902439024 70 40 63.1 2 3 209 255 322 QDT68364.1 putative murein peptide carboxypeptidase [Planctomycetes bacterium MalM25] diamond 210 43.9 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetes bacterium MalM25
30547496 30547496 PRJNA1241156_S_NODE_18253_length_373_cov_2.045455_g17793_i0 PRJNA1241156 18253 373 2.045455 7.62954715 Gemmataceae bacterium 2052164 Bacteria Bacteria 47.4 0.00394   NR MSQ94020.1 2052164 g17793 i0 34.2 0.635388739946381 79 32 51.5 3 64 255 1088 1161 MSQ94020.1 serine/threonine protein kinase [Gemmataceae bacterium] diamond 237 47.4 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae   Gemmataceae bacterium
32381567 32381567 PRJNA1241156_S_NODE_18399_length_372_cov_4.465046_g17939_i0 PRJNA1241156 18399 372 4.465046 16.60997112 Planctomycetia bacterium 2052181 Bacteria Bacteria 45.4 0.0167   NR GDX94692.1 2052181 g17939 i0 38.2 0.548387096774194 68 37 54.8 2 133 336 246 308 GDX94692.1 hypothetical protein LBMAG47_03550 [Planctomycetia bacterium] diamond 204 45.4 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia       Planctomycetia bacterium
32602815 32602815 PRJNA1241156_S_NODE_54260_length_266_cov_1.426009_g53800_i0 PRJNA1241156 54260 266 1.426009 3.79318394 Sedimentisphaerales bacterium 2813034 Bacteria Bacteria 46.2 0.00278   NR MBN2376472.1 2813034 g53800 i0 52.4 0.473684210526316 42 18 46.2 2 51 173 153 193 MBN2376472.1 Gfo/Idh/MocA family oxidoreductase [Sedimentisphaerales bacterium] diamond 126 46.2 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Sedimentisphaerales     Sedimentisphaerales bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;