RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1241156", tax_phylum = "Acidobacteriota" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 3 ✖

tax_phylum 1

  • Acidobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1241156 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28810127 28810127 PRJNA1241156_S_NODE_34188_length_318_cov_4.021818_g33728_i0 PRJNA1241156 34188 318 4.021818 12.78938124 Blastocatellia bacterium 2052146 Bacteria Bacteria 43.9 0.0349   NR HJQ70595.1 2052146 g33728 i0 47.6 0.39622641509434 42 22 39.6 0 59 184 160 201 HJQ70595.1 hypothetical protein [Blastocatellia bacterium] diamond 126 43.9 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia       Blastocatellia bacterium
30926862 30926862 PRJNA1241156_S_NODE_65694_length_242_cov_1.969849_g65234_i0 PRJNA1241156 65694 242 1.969849 4.76703458 Terriglobales bacterium 2282142 Bacteria Bacteria 141 3.399999999999999e-38   NR HEV2713970.1 2282142 g65234 i0 91 0.966942148760331 78 7 96.7 0 7 240 117 194 HEV2713970.1 hypothetical protein [Terriglobales bacterium] diamond 234 141 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales     Terriglobales bacterium
31703550 31703550 PRJNA1241156_S_NODE_39697_length_303_cov_3.226923_g39237_i0 PRJNA1241156 39697 303 3.226923 9.77757669 root 1 Root_unresolved Root_unresolved 49.3 3.69e-4   NR MCY3928762.1 1978231 g39237 i0 72.4 2.35643564356436 29 8 28.7 0 54 140 608 636 MCY3928762.1 reverse transcriptase family protein [Acidobacteriota bacterium] diamond 714 49.3 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;