RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1241156", tax_kingdom = "Metazoa" and tax_phylum = "Echinodermata"

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tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 3 ✖

tax_kingdom 1

  • Metazoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1241156 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26946926 26946926 PRJNA1241156_S_NODE_25642_length_344_cov_7.328904_g25182_i0 PRJNA1241156 25642 344 7.328904 25.21142976 Holothuria leucospilota 206669 Echinodermata other_Eukaryota 51.2 1.2e-4   NR KAJ8043401.1 206669 g25182 i0 33.7 1.5 86 41 61 2 291 82 34 119 KAJ8043401.1 hypothetical protein HOLleu_10463 [Holothuria leucospilota] diamond 516 51.2 1 Eukaryota Opisthokonta Metazoa Echinodermata Holothuroidea Aspidochirotida Holothuriidae Holothuria Holothuria leucospilota
30926856 30926856 PRJNA1241156_S_NODE_3634_length_561_cov_4.034749_g3230_i0 PRJNA1241156 3634 561 4.034749 22.63494189 Holothuria leucospilota 206669 Echinodermata other_Eukaryota 91.7 2.88e-19   NR KAJ8035451.1 206669 g3230 i0 47.1 2.79679144385027 85 45 45.5 0 457 203 83 167 KAJ8035451.1 hypothetical protein HOLleu_22679 [Holothuria leucospilota] diamond 1569 92 0.996739130434783 Eukaryota Opisthokonta Metazoa Echinodermata Holothuroidea Aspidochirotida Holothuriidae Holothuria Holothuria leucospilota
32791515 32791515 PRJNA1241156_S_NODE_70900_length_226_cov_7.448087_g70440_i0 PRJNA1241156 70900 226 7.448087 16.83267662 Lytechinus variegatus 7654 Echinodermata other_Eukaryota 51.6 2.1e-5   NR XP_041453261.1 7654 g70440 i0 85.7 2.04424778761062 28 4 37.2 0 137 220 245 272 XP_041453261.1 beta-parvin-like [Lytechinus variegatus] diamond 462 51.6 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus variegatus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;