RNAquarium Metadata Server
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contig_metadata

9 rows where bioproject = "PRJNA1240805" and tax_phylum = "Oomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 9 ✖

tax_clade 1

bioproject 1

  • PRJNA1240805 · 9 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3601080 3601080 PRJNA1240805_P_NODE_5623_length_192_cov_5.440559_g5574_i0 PRJNA1240805 5623 192 5.440559 10.44587328 root 1 Root_unresolved Root_unresolved 291 3.22e-74   NTclustered gi|166046653|emb|CU367770.1| 100861 g5574 i0 99.375 14.890625 160 1 83 0 1 160 457 298 Aphanomyces euteiches cDNA blastn 2859 291 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
4878582 4878582 PRJNA1240805_P_NODE_2084_length_334_cov_5.245614_g2035_i0 PRJNA1240805 2084 334 5.245614 17.52035076 Hyaloperonospora 184462 SAR_Eukaryotes SAR_Eukaryotes 521 2e-143   NTclustered gi|33520229|gb|AY273974.1| 162125 g2035 i0 96.541 95.1736526946108 318 5 93 3 23 334 137 454 Hyaloperonospora brassicae large subunit ribosomal RNA gene, partial sequence blastn 31788 521 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Hyaloperonospora Hyaloperonospora brassicae
5452926 5452926 PRJNA1240805_P_NODE_3825_length_236_cov_9.871658_g3776_i0 PRJNA1240805 3825 236 9.871658 23.29711288 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 401 1.8199999999999993e-107   NTclustered gi|166046724|emb|CU367834.1| 100861 g3776 i0 100 10.114406779661 217 0 92 0 20 236 272 56 Aphanomyces euteiches cDNA blastn 2387 401 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
6727281 6727281 PRJNA1240805_P_NODE_4966_length_205_cov_2.467949_g4917_i0 PRJNA1240805 4966 205 2.467949 5.05929545 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 80.5 8.21e-11   NTclustered gi|325195177|emb|FR825972.1| 890382 g4917 i0 95.918 0.478048780487805 49 2 24 0 147 195 359 311 Albugo laibachii Nc14, genomic contig CONTIG_3045_NC14_v4_482_22195 blastn 98 80.5 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
7428376 7428376 PRJNA1240805_P_NODE_4166_length_225_cov_1.954545_g4117_i0 PRJNA1240805 4166 225 1.954545 4.39772625 root 1 Root_unresolved Root_unresolved 416 6.159999999999998e-112   NTclustered gi|166046724|emb|CU367834.1| 100861 g4117 i0 100 23.0133333333333 225 0 100 0 1 225 733 509 Aphanomyces euteiches cDNA blastn 5178 416 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
21452334 21452334 PRJNA1240805_P_NODE_5277_length_198_cov_29.724832_g5228_i0 PRJNA1240805 5277 198 29.724832 58.85516736 root 1 Root_unresolved Root_unresolved 327 2.55e-85   NTclustered gi|166046732|emb|CU367842.1| 100861 g5228 i0 100 39.5 177 0 89 0 22 198 289 113 Aphanomyces euteiches cDNA blastn 7821 327 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
22026239 22026239 PRJNA1240805_P_NODE_818_length_555_cov_15.887352_g771_i0 PRJNA1240805 818 555 15.887352 88.1748036 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 961 0   NTclustered gi|166044498|emb|CU367407.1| 100861 g771 i0 99.62 94.5117117117117 526 2 95 0 23 548 846 321 Aphanomyces euteiches cDNA blastn 52454 961 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
30376485 30376485 PRJNA1240805_P_NODE_5352_length_197_cov_5.554054_g5303_i0 PRJNA1240805 5352 197 5.554054 10.94148638 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 46.6 5.79e-4   NR KAF1771875.1 29920 g5303 i0 53.7 4.55329949238579 54 25 82.2 0 2 163 18 71 KAF1771875.1 hypothetical protein GQ600_12051 [Phytophthora cactorum] diamond 897 46.6 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cactorum
32652028 32652028 PRJNA1240805_P_NODE_4940_length_205_cov_8.596154_g4891_i0 PRJNA1240805 4940 205 8.596154 17.6221157 Peronosporomycetes 3418804 SAR_Eukaryotes SAR_Eukaryotes 80.1 1.57e-15   NR DAZ99178.1 4803 g4891 i0 83.7 9.70243902439024 43 7 62.9 0 183 55 973 1015 DAZ99178.1 TPA: hypothetical protein N0F65_008211 [Lagenidium giganteum] diamond 1989 80.5 0.995031055900621 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Lagenidium Lagenidium giganteum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;