contig_metadata
10 rows where bioproject = "PRJNA1240805", tax_phylum = "Nitrospirota" and tax_superkingdom = "Bacteria"
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| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 2900235 | 2900235 | PRJNA1240805_P_NODE_1043_length_489_cov_2.797727_g996_i0 | PRJNA1240805 | 1043 | 489 | 2.797727 | 13.68088503 | Nitrospira sp. | 70125 | Bacteria | Bacteria | 300 | 2.91e-100 | NR | MBK8277207.1 | 70125 | g996 | i0 | 94.3 | 0.96319018404908 | 157 | 9 | 96.3 | 0 | 17 | 487 | 130 | 286 | MBK8277207.1 NAD-dependent epimerase/dehydratase family protein [Nitrospira sp.] | diamond | 471 | 300 | 1 | Bacteria | Pseudomonadati | Nitrospirota | Nitrospiria | Nitrospirales | Nitrospiraceae | Nitrospira | Nitrospira sp. | ||
| 9277660 | 9277660 | PRJNA1240805_P_NODE_1548_length_395_cov_2.491329_g1499_i0 | PRJNA1240805 | 1548 | 395 | 2.491329 | 9.84074955 | Nitrospira sp. | 70125 | Bacteria | Bacteria | 231 | 4.519999999999998e-56 | NTclustered | gi|2194428397|gb|CP092079.1| | 70125 | g1499 | i0 | 85.022 | 0.574683544303797 | 227 | 34 | 57 | 0 | 169 | 395 | 2669360 | 2669586 | MAG: Nitrospira sp. isolate UBC3 chromosome | blastn | 227 | 231 | 1 | Bacteria | Pseudomonadati | Nitrospirota | Nitrospiria | Nitrospirales | Nitrospiraceae | Nitrospira | Nitrospira sp. | ||
| 27041971 | 27041971 | PRJNA1240805_P_NODE_3222_length_259_cov_13.995238_g3173_i0 | PRJNA1240805 | 3222 | 259 | 13.995238 | 36.24766642 | Nitrospiraceae bacterium | 2026770 | Bacteria | Bacteria | 159 | 1.0299999999999998e-43 | NR | MBX9657915.1 | 2026770 | g3173 | i0 | 96.4 | 0.961389961389961 | 83 | 3 | 96.1 | 0 | 249 | 1 | 106 | 188 | MBX9657915.1 response regulator [Nitrospiraceae bacterium] | diamond | 249 | 159 | 1 | Bacteria | Pseudomonadati | Nitrospirota | Nitrospiria | Nitrospirales | Nitrospiraceae | Nitrospiraceae bacterium | |||
| 28747331 | 28747331 | PRJNA1240805_P_NODE_6087_length_185_cov_4.735294_g6038_i0 | PRJNA1240805 | 6087 | 185 | 4.735294 | 8.7602939 | Nitrospira sp. | 70125 | Bacteria | Bacteria | 66.2 | 4.34e-12 | NR | HAN93880.1 | 70125 | g6038 | i0 | 64.2 | 1.08648648648649 | 67 | 16 | 95.7 | 2 | 4 | 180 | 47 | 113 | HAN93880.1 hypothetical protein [Nitrospira sp.] | diamond | 201 | 66.2 | 1 | Bacteria | Pseudomonadati | Nitrospirota | Nitrospiria | Nitrospirales | Nitrospiraceae | Nitrospira | Nitrospira sp. | ||
| 28778787 | 28778787 | PRJNA1240805_P_NODE_6407_length_181_cov_1.689394_g6358_i0 | PRJNA1240805 | 6407 | 181 | 1.689394 | 3.05780314 | Nitrospirota bacterium | 2026887 | Bacteria | Bacteria | 72.4 | 6.38e-14 | NR | MBI4682166.1 | 2026887 | g6358 | i0 | 57.1 | 6.14917127071823 | 63 | 18 | 89.5 | 2 | 18 | 179 | 24 | 86 | MBI4682166.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein [Nitrospirota bacterium] | diamond | 1113 | 72.4 | 1 | Bacteria | Pseudomonadati | Nitrospirota | Nitrospirota bacterium | ||||||
| 30736954 | 30736954 | PRJNA1240805_P_NODE_2934_length_274_cov_17.657778_g2885_i0 | PRJNA1240805 | 2934 | 274 | 17.657778 | 48.38231172 | Nitrospira lenta | 1436998 | Bacteria | Bacteria | 165 | 1.67e-49 | NR | WP_121990515.1 | 1436998 | g2885 | i0 | 97.7 | 0.941605839416058 | 86 | 2 | 94.2 | 0 | 15 | 272 | 49 | 134 | WP_121990515.1 response regulator [Nitrospira lenta] | diamond | 258 | 165 | 1 | Bacteria | Pseudomonadati | Nitrospirota | Nitrospiria | Nitrospirales | Nitrospiraceae | Nitrospira | Nitrospira lenta | ||
| 31147392 | 31147392 | PRJNA1240805_P_NODE_8095_length_163_cov_1.947368_g8046_i0 | PRJNA1240805 | 8095 | 163 | 1.947368 | 3.17420984 | Nitrospira sp. | 70125 | Bacteria | Bacteria | 118 | 4.02e-31 | NR | MCS6285447.1 | 70125 | g8046 | i0 | 100 | 0.993865030674847 | 54 | 0 | 99.4 | 0 | 163 | 2 | 170 | 223 | MCS6285447.1 hypothetical protein [Nitrospira sp.] | diamond | 162 | 118 | 1 | Bacteria | Pseudomonadati | Nitrospirota | Nitrospiria | Nitrospirales | Nitrospiraceae | Nitrospira | Nitrospira sp. | ||
| 31671869 | 31671869 | PRJNA1240805_P_NODE_6957_length_174_cov_2.896000_g6908_i0 | PRJNA1240805 | 6957 | 174 | 2.896 | 5.03904 | Pseudomonadati | 3379134 | Bacteria | Bacteria | 56.6 | 1.79e-7 | NR | HEY7130390.1 | 70125 | g6908 | i0 | 55.2 | 3.91379310344828 | 58 | 26 | 100 | 0 | 174 | 1 | 19 | 76 | HEY7130390.1 AMP-binding protein [Nitrospira sp.] | diamond | 681 | 56.6 | 1 | Bacteria | Pseudomonadati | Nitrospirota | Nitrospiria | Nitrospirales | Nitrospiraceae | Nitrospira | Nitrospira sp. | ||
| 32318522 | 32318522 | PRJNA1240805_P_NODE_6759_length_176_cov_3.637795_g6710_i0 | PRJNA1240805 | 6759 | 176 | 3.637795 | 6.4025192 | Nitrospira sp. | 70125 | Bacteria | Bacteria | 45.1 | 0.00231 | NR | MCI0526054.1 | 70125 | g6710 | i0 | 43.1 | 1.72159090909091 | 58 | 28 | 98.9 | 1 | 1 | 174 | 325 | 377 | MCI0526054.1 UvrD-helicase domain-containing protein [Nitrospira sp.] | diamond | 303 | 45.1 | 1 | Bacteria | Pseudomonadati | Nitrospirota | Nitrospiria | Nitrospirales | Nitrospiraceae | Nitrospira | Nitrospira sp. | ||
| 32413239 | 32413239 | PRJNA1240805_P_NODE_6059_length_186_cov_1.489051_g6010_i0 | PRJNA1240805 | 6059 | 186 | 1.489051 | 2.76963486 | Nitrospira sp. | 70125 | Bacteria | Bacteria | 45.8 | 0.00136 | NR | MDO9119191.1 | 70125 | g6010 | i0 | 95.2 | 0.67741935483871 | 21 | 1 | 33.9 | 0 | 2 | 64 | 290 | 310 | MDO9119191.1 NAD-dependent epimerase/dehydratase family protein [Nitrospira sp.] | diamond | 126 | 45.8 | 1 | Bacteria | Pseudomonadati | Nitrospirota | Nitrospiria | Nitrospirales | Nitrospiraceae | Nitrospira | Nitrospira sp. |
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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;