RNAquarium Metadata Server
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contig_metadata

10 rows where bioproject = "PRJNA1240805", tax_phylum = "Kitrinoviricota" and tax_superkingdom = "Viruses"

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analysis 2

tax_superkingdom 1

  • Viruses · 10 ✖

tax_phylum 1

  • Kitrinoviricota · 10 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1240805 · 10 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
349313 349313 PRJNA1240805_P_NODE_4121_length_226_cov_14.994350_g4072_i0 PRJNA1240805 4121 226 14.99435 33.887231 Jujube closterovirus 1 3043313 Viruses Viruses 56.5 0.002   NTclustered gi|2496749738|gb|OP673405.1| 3043313 g4072 i0 100 0.256637168141593 30 0 13 0 1 30 6 35 Jujube closterovirus 1 isolate AKS15-20, complete genome blastn 58 56.5 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Closteroviridae   Jujube closterovirus 1
4176569 4176569 PRJNA1240805_P_NODE_1844_length_357_cov_13.775974_g1795_i0 PRJNA1240805 1844 357 13.775974 49.18022718 Carlavirus latensdianthi 3427766 Viruses Viruses 52.8 0.034   NTclustered gi|1995060321|gb|MN450069.1| 12164 g1795 i0 100 0.0784313725490196 28 0 8 0 1 28 15 42 Carnation latent virus isolate KL, complete genome blastn 28 52.8 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Carlavirus Carlavirus latensdianthi
9277672 9277672 PRJNA1240805_P_NODE_2568_length_296_cov_2.060729_g2519_i0 PRJNA1240805 2568 296 2.060729 6.09975784 Pestivirus bovis 3052619 Viruses Viruses 508 1.36e-139   NTclustered gi|1129880483|gb|KX170609.1| 11099 g2519 i0 97.635 98.7364864864865 296 7 100 0 1 296 616 321 Bovine viral diarrhea virus 1 isolate V087 NS5A gene, partial cds blastn 29226 508 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus bovis
18201172 18201172 PRJNA1240805_P_NODE_3855_length_235_cov_8.059140_g3806_i0 PRJNA1240805 3855 235 8.05914 18.938979 Jujube closterovirus 1 3043313 Viruses Viruses 54.7 0.006   NTclustered gi|2496749738|gb|OP673405.1| 3043313 g3806 i0 100 0.123404255319149 29 0 12 0 207 235 36 8 Jujube closterovirus 1 isolate AKS15-20, complete genome blastn 29 54.7 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Closteroviridae   Jujube closterovirus 1
20176686 20176686 PRJNA1240805_P_NODE_3916_length_233_cov_15.913043_g3867_i0 PRJNA1240805 3916 233 15.913043 37.07739019 Tobamovirus 12234 Viruses Viruses 388 1.4e-103   NTclustered gi|1496534726|gb|MH271428.1| 12235 g3867 i0 100 40.3948497854077 210 0 90 0 24 233 834 1043 Cucumber green mottle mosaic virus isolate CG023, complete genome blastn 9412 388 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus viridimaculae
20750980 20750980 PRJNA1240805_P_NODE_5437_length_196_cov_1.557823_g5388_i0 PRJNA1240805 5437 196 1.557823 3.05333308 Pestivirus bovis 3052619 Viruses Viruses 346 6.94e-91   NTclustered gi|575471150|gb|KF772785.1| 11099 g5388 i0 98.469 99.780612244898 196 3 100 0 1 196 7710 7515 Bovine viral diarrhea virus 1 isolate CC13B, complete genome blastn 19557 346 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus bovis
23301842 23301842 PRJNA1240805_P_NODE_2819_length_281_cov_6.793103_g2770_i0 PRJNA1240805 2819 281 6.793103 19.08861943 Tuatara cloaca-associated tombusvirus-1 2970558 Viruses Viruses 89.8 1.97e-13   NTclustered gi|2284660261|gb|OP080581.1| 2970558 g2770 i0 85.556 3.2135231316726 90 8 31 4 49 134 3177 3265 MAG: Tuatara cloaca-associated tombusvirus-1 isolate T65 RNA-dependent RNA polymerase and coat protein genes, complete cds blastn 903 89.8 1 Viruses   Orthornavirae Kitrinoviricota Tolucaviricetes Tolivirales Tombusviridae Tombusvirus Tuatara cloaca-associated tombusvirus-1
23301891 23301891 PRJNA1240805_P_NODE_6439_length_180_cov_7.030534_g6390_i0 PRJNA1240805 6439 180 7.030534 12.6549612 Carlavirus latensdianthi 3427766 Viruses Viruses 54.7 0.004   NTclustered gi|1995060321|gb|MN450069.1| 12164 g6390 i0 100 0.161111111111111 29 0 16 0 152 180 43 15 Carnation latent virus isolate KL, complete genome blastn 29 54.7 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Carlavirus Carlavirus latensdianthi
24575783 24575783 PRJNA1240805_P_NODE_5660_length_192_cov_1.818182_g5611_i0 PRJNA1240805 5660 192 1.818182 3.49090944 Pestivirus bovis 3052619 Viruses Viruses 294 2.49e-75   NTclustered gi|77799881|dbj|AB111964.2| 233886 g5611 i0 94.271 96.8020833333333 192 11 100 0 1 192 1774 1965 Bovine viral diarrhea virus 839cp gene for poryprotein, partai cds, strain: 839cp blastn 18586 294 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus bovis
27122973 27122973 PRJNA1240805_P_NODE_1682_length_377_cov_8.240854_g1633_i0 PRJNA1240805 1682 377 8.240854 31.06801958 Viruses 10239 Viruses Viruses 185 3.959999999999999e-52   NR WRQ65486.1 2809914 g1633 i0 70.7 2.72148541114058 116 34 92.3 0 367 20 529 644 WRQ65486.1 polyprotein [Tolivirales sp.] diamond 1026 185 1 Viruses   Orthornavirae Kitrinoviricota Tolucaviricetes Tolivirales     Tolivirales sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;