RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1240805", tax_clade = "Sar" and tax_phylum = "Endomyxa"

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tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1240805 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
23301897 23301897 PRJNA1240805_P_NODE_7059_length_173_cov_3.032258_g7010_i0 PRJNA1240805 7059 173 3.032258 5.24580634 Woronina pythii 1484336 SAR_Eukaryotes SAR_Eukaryotes 104 3.96e-18   NTclustered gi|1031965309|gb|KX011114.1| 1484336 g7010 i0 88.506 2.36994219653179 87 9 50 1 1 87 3753 3838 Woronina pythii isolate PD0236 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 410 104 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Woronina Woronina pythii
24575775 24575775 PRJNA1240805_P_NODE_5060_length_203_cov_3.811688_g5011_i0 PRJNA1240805 5060 203 3.811688 7.73772664 Spongospora subterranea 70186 SAR_Eukaryotes SAR_Eukaryotes 95.3 2.9e-15   NTclustered gi|1150151083|ref|NC_034004.1| 70186 g5011 i0 90.411 0.359605911330049 73 5 36 1 131 203 18295 18365 Spongospora subterranea mitochondrion, complete genome blastn 73 95.3 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Spongospora Spongospora subterranea

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;