contig_metadata
16 rows where bioproject = "PRJNA1240805", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"
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| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 349337 | 349337 | PRJNA1240805_P_NODE_5841_length_189_cov_2.885714_g5792_i0 | PRJNA1240805 | 5841 | 189 | 2.885714 | 5.45399946 | Luteolibacter sp. Populi | 3230487 | Bacteria | Bacteria | 202 | 1.5199999999999998e-47 | NTclustered | gi|2774618348|gb|CP161812.1| | 3230487 | g5792 | i0 | 90.26 | 325.386243386243 | 154 | 15 | 81 | 0 | 1 | 154 | 3261438 | 3261591 | Luteolibacter sp. Populi chromosome, complete genome | blastn | 61498 | 202 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | Verrucomicrobiales | Verrucomicrobiaceae | Luteolibacter | Luteolibacter sp. Populi | |
| 349343 | 349343 | PRJNA1240805_P_NODE_6521_length_179_cov_4.746154_g6472_i0 | PRJNA1240805 | 6521 | 179 | 4.746154 | 8.49561566 | Sulfuriroseicoccus oceanibius | 2707525 | Bacteria | Bacteria | 174 | 3.1e-39 | NTclustered | gi|1953472588|gb|CP066776.1| | 2707525 | g6472 | i0 | 86.335 | 196.469273743017 | 161 | 21 | 89 | 1 | 1 | 160 | 632190 | 632030 | Sulfuriroseicoccus oceanibius strain T37 chromosome, complete genome | blastn | 35168 | 174 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | Verrucomicrobiales | Verrucomicrobiaceae | Sulfuriroseicoccus | Sulfuriroseicoccus oceanibius | |
| 2325855 | 2325855 | PRJNA1240805_P_NODE_4462_length_216_cov_15.610778_g4413_i0 | PRJNA1240805 | 4462 | 216 | 15.610778 | 33.71928048 | Prosthecobacter | 48463 | Bacteria | Bacteria | 346 | 7.810000000000001e-91 | NTclustered | gi|164510704|emb|AJ966883.1| | 48466 | g4413 | i0 | 98.964 | 88.8981481481482 | 193 | 2 | 89 | 0 | 24 | 216 | 700 | 892 | Prosthecobacter vanneervenii 16S rRNA gene (partial), 23S rRNA gene, tRNA-Ala gene, tRNA-Ile gene, ITS1 and ITS2, strain DSM 12252 | blastn | 19202 | 346 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | Verrucomicrobiales | Verrucomicrobiaceae | Prosthecobacter | Prosthecobacter vanneervenii | |
| 2325870 | 2325870 | PRJNA1240805_P_NODE_5922_length_188_cov_2.517986_g5873_i0 | PRJNA1240805 | 5922 | 188 | 2.517986 | 4.73381368 | Prosthecobacter | 48463 | Bacteria | Bacteria | 287 | 4.06e-73 | NTclustered | gi|12583974|gb|AF245378.1|AF245378 | 48464 | g5873 | i0 | 97.605 | 251.909574468085 | 167 | 4 | 89 | 0 | 22 | 188 | 1726 | 1892 | Prosthecobacter fusiformis 23S ribosomal RNA gene, partial sequence | blastn | 47359 | 287 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | Verrucomicrobiales | Verrucomicrobiaceae | Prosthecobacter | Prosthecobacter fusiformis | |
| 2900278 | 2900278 | PRJNA1240805_P_NODE_4283_length_221_cov_7.441860_g4234_i0 | PRJNA1240805 | 4283 | 221 | 7.44186 | 16.4465106 | Prosthecobacter vanneervenii | 48466 | Bacteria | Bacteria | 230 | 8.43e-56 | NTclustered | gi|12583975|gb|AF245379.1|AF245379 | 48466 | g4234 | i0 | 87.5 | 215.493212669683 | 200 | 23 | 90 | 2 | 1 | 199 | 1058 | 860 | Prosthecobacter sp. FC-2 23S ribosomal RNA gene, partial sequence | blastn | 47624 | 230 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | Verrucomicrobiales | Verrucomicrobiaceae | Prosthecobacter | Prosthecobacter vanneervenii | |
| 2900301 | 2900301 | PRJNA1240805_P_NODE_5963_length_187_cov_5.210145_g5914_i0 | PRJNA1240805 | 5963 | 187 | 5.210145 | 9.74297115 | Prosthecobacter vanneervenii | 48466 | Bacteria | Bacteria | 219 | 1.4899999999999999e-52 | NTclustered | gi|12583975|gb|AF245379.1|AF245379 | 48466 | g5914 | i0 | 91.25 | 28.1497326203209 | 160 | 14 | 86 | 0 | 24 | 183 | 2234 | 2393 | Prosthecobacter sp. FC-2 23S ribosomal RNA gene, partial sequence | blastn | 5264 | 219 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | Verrucomicrobiales | Verrucomicrobiaceae | Prosthecobacter | Prosthecobacter vanneervenii | |
| 3601067 | 3601067 | PRJNA1240805_P_NODE_3443_length_250_cov_2.776119_g3394_i0 | PRJNA1240805 | 3443 | 250 | 2.776119 | 6.9402975 | Prosthecobacter | 48463 | Bacteria | Bacteria | 207 | 4.57e-49 | NTclustered | gi|12583974|gb|AF245378.1|AF245378 | 48464 | g3394 | i0 | 86.154 | 12.924 | 195 | 24 | 77 | 3 | 1 | 193 | 363 | 170 | Prosthecobacter fusiformis 23S ribosomal RNA gene, partial sequence | blastn | 3231 | 207 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | Verrucomicrobiales | Verrucomicrobiaceae | Prosthecobacter | Prosthecobacter fusiformis | |
| 5452957 | 5452957 | PRJNA1240805_P_NODE_6305_length_182_cov_4.150376_g6256_i0 | PRJNA1240805 | 6305 | 182 | 4.150376 | 7.55368432 | Pedosphaera parvula | 1032527 | Bacteria | Bacteria | 219 | 1.44e-52 | NTclustered | gi|183579829|emb|AM905426.1| | 320771 | g6256 | i0 | 91.25 | 76.5054945054945 | 160 | 14 | 88 | 0 | 1 | 160 | 1185 | 1026 | Bacterium Ellin514 23S rRNA gene, isolate Ellin514 | blastn | 13924 | 219 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Pedosphaerae | Pedosphaerales | Pedosphaeraceae | Pedosphaera | Pedosphaera parvula | |
| 13103248 | 13103248 | PRJNA1240805_P_NODE_2791_length_282_cov_15.253219_g2742_i0 | PRJNA1240805 | 2791 | 282 | 15.253219 | 43.01407758 | Prosthecobacter vanneervenii | 48466 | Bacteria | Bacteria | 436 | 6.15e-118 | NTclustered | gi|12583975|gb|AF245379.1|AF245379 | 48466 | g2742 | i0 | 96.923 | 263.198581560284 | 260 | 8 | 92 | 0 | 1 | 260 | 1065 | 806 | Prosthecobacter sp. FC-2 23S ribosomal RNA gene, partial sequence | blastn | 74222 | 436 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | Verrucomicrobiales | Verrucomicrobiaceae | Prosthecobacter | Prosthecobacter vanneervenii | |
| 13803922 | 13803922 | PRJNA1240805_P_NODE_5371_length_197_cov_3.094595_g5322_i0 | PRJNA1240805 | 5371 | 197 | 3.094595 | 6.09635215 | Opitutus | 178440 | Bacteria | Bacteria | 318 | 1.52e-82 | NTclustered | gi|470483113|ref|NR_076574.1| | 107709 | g5322 | i0 | 98.343 | 78.4822335025381 | 181 | 3 | 92 | 0 | 17 | 197 | 1642 | 1822 | Opitutus terrae strain PB90-1 23S ribosomal RNA gene, complete sequence | blastn | 15461 | 318 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Opitutia | Opitutales | Opitutaceae | Opitutus | Opitutus terrae | |
| 15652465 | 15652465 | PRJNA1240805_P_NODE_6913_length_174_cov_9.952000_g6864_i0 | PRJNA1240805 | 6913 | 174 | 9.952 | 17.31648 | Prosthecobacter fusiformis | 48464 | Bacteria | Bacteria | 261 | 2.23e-65 | NTclustered | gi|12583974|gb|AF245378.1|AF245378 | 48464 | g6864 | i0 | 97.386 | 244.425287356322 | 153 | 4 | 88 | 0 | 1 | 153 | 1804 | 1652 | Prosthecobacter fusiformis 23S ribosomal RNA gene, partial sequence | blastn | 42530 | 261 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | Verrucomicrobiales | Verrucomicrobiaceae | Prosthecobacter | Prosthecobacter fusiformis | |
| 19475517 | 19475517 | PRJNA1240805_P_NODE_6976_length_174_cov_2.024000_g6927_i0 | PRJNA1240805 | 6976 | 174 | 2.024 | 3.52176 | uncultured Opitutia bacterium | 575426 | Bacteria | Bacteria | 265 | 1.73e-66 | NTclustered | gi|256858896|gb|GQ390240.1| | 575426 | g6927 | i0 | 98.026 | 87.4425287356322 | 152 | 3 | 87 | 0 | 23 | 174 | 58 | 209 | Uncultured Opitutae bacterium clone eub623B12 16S ribosomal RNA gene, partial sequence | blastn | 15215 | 265 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Opitutia | uncultured Opitutia bacterium | ||||
| 22026211 | 22026211 | PRJNA1240805_P_NODE_5278_length_198_cov_13.865772_g5229_i0 | PRJNA1240805 | 5278 | 198 | 13.865772 | 27.45422856 | Prosthecobacter vanneervenii | 48466 | Bacteria | Bacteria | 283 | 5.589999999999999e-72 | NTclustered | gi|12583975|gb|AF245379.1|AF245379 | 48466 | g5229 | i0 | 95.48 | 27.0656565656566 | 177 | 8 | 89 | 0 | 21 | 197 | 331 | 507 | Prosthecobacter sp. FC-2 23S ribosomal RNA gene, partial sequence | blastn | 5359 | 283 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | Verrucomicrobiales | Verrucomicrobiaceae | Prosthecobacter | Prosthecobacter vanneervenii | |
| 24002523 | 24002523 | PRJNA1240805_P_NODE_4599_length_213_cov_11.256098_g4550_i0 | PRJNA1240805 | 4599 | 213 | 11.256098 | 23.97548874 | Verrucomicrobiaceae | 203557 | Bacteria | Bacteria | 363 | 7.619999999999997e-96 | NTclustered | gi|2889362999|gb|CP151838.1| | 454148 | g4550 | i0 | 99.01 | 275.971830985916 | 202 | 2 | 95 | 0 | 12 | 213 | 782508 | 782709 | Roseibacillus persicicus strain AS69 chromosome, complete genome | blastn | 58782 | 363 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | Verrucomicrobiales | Verrucomicrobiaceae | Roseibacillus | Roseibacillus persicicus | |
| 24575748 | 24575748 | PRJNA1240805_P_NODE_2720_length_286_cov_6.236287_g2671_i0 | PRJNA1240805 | 2720 | 286 | 6.236287 | 17.83578082 | Prosthecobacter vanneervenii | 48466 | Bacteria | Bacteria | 427 | 3.76e-115 | NTclustered | gi|12583975|gb|AF245379.1|AF245379 | 48466 | g2671 | i0 | 97.967 | 231.846153846154 | 246 | 5 | 86 | 0 | 24 | 269 | 493 | 738 | Prosthecobacter sp. FC-2 23S ribosomal RNA gene, partial sequence | blastn | 66308 | 427 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | Verrucomicrobiales | Verrucomicrobiaceae | Prosthecobacter | Prosthecobacter vanneervenii | |
| 28778785 | 28778785 | PRJNA1240805_P_NODE_1867_length_354_cov_27.659016_g1818_i0 | PRJNA1240805 | 1867 | 354 | 27.659016 | 97.91291664 | Verrucomicrobiota bacterium | 2026799 | Bacteria | Bacteria | 47.8 | 0.00236 | NR | MBI5385683.1 | 2026799 | g1818 | i0 | 59.5 | 0.313559322033898 | 37 | 15 | 31.4 | 0 | 221 | 331 | 895 | 931 | MBI5385683.1 autotransporter-associated beta strand repeat-containing protein [Verrucomicrobiota bacterium] | diamond | 111 | 47.8 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiota bacterium |
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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;