RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1240805", tax_clade = "Opisthokonta" and tax_phylum = "Cnidaria"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Cnidaria · 3 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 3 ✖

bioproject 1

  • PRJNA1240805 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10553532 10553532 PRJNA1240805_P_NODE_6429_length_180_cov_11.061069_g6380_i0 PRJNA1240805 6429 180 11.061069 19.9099242 Polypodium hydriforme 43186 Cnidaria other_Eukaryota 86.1 1.51e-12   NTclustered gi|2663986578|emb|OY756919.1| 43186 g6380 i0 84.444 0.5 90 11 48 3 94 180 2953 3042 Polypodium hydriforme genes for 18S rRNA, ITS1, 5.8S rRNA, ITS2, 28S rRNA complete sequences blastn 90 86.1 1 Eukaryota Opisthokonta Metazoa Cnidaria Polypodiozoa Polypodiidea Polypodiidae Polypodium Polypodium hydriforme
10553549 10553549 PRJNA1240805_P_NODE_8389_length_161_cov_0.910714_g8340_i0 PRJNA1240805 8389 161 0.910714 1.46624954 Eunicella cavolini 317547 Cnidaria other_Eukaryota 52.8 0.013   NTclustered gi|2918369538|emb|OZ237720.1| 317547 g8340 i0 96.875 0.198757763975155 32 0 19 1 127 157 3065555 3065524 Eunicella cavolini genome assembly, chromosome: 4 blastn 32 52.8 1 Eukaryota Opisthokonta Metazoa Cnidaria Anthozoa Malacalcyonacea Eunicellidae Eunicella Eunicella cavolini
30217983 30217983 PRJNA1240805_P_NODE_2592_length_294_cov_6.812245_g2543_i0 PRJNA1240805 2592 294 6.812245 20.0280003 root 1 Root_unresolved Root_unresolved 120 3.969999999999999e-31   NR EDO25965.1 45351 g2543 i0 66.3 2.72448979591837 89 29 89.8 1 29 292 138 226 EDO25965.1 predicted protein, partial [Nematostella vectensis] diamond 801 120 1 Eukaryota Opisthokonta Metazoa Cnidaria Anthozoa Actiniaria Edwardsiidae Nematostella Nematostella vectensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;