RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

29 rows where bioproject = "PRJNA1240805" and tax_clade = "Discoba"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

analysis 2

tax_superkingdom 1

tax_clade 1

  • Discoba · 29 ✖

bioproject 1

  • PRJNA1240805 · 29 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
349329 349329 PRJNA1240805_P_NODE_5181_length_200_cov_12.741722_g5132_i0 PRJNA1240805 5181 200 12.741722 25.483444 Heterolobosea sp. 1892890 Heterolobosea other_Eukaryota 187 4.57e-43   NTclustered gi|1059971677|gb|KT892699.1| 1892890 g5132 i0 85.876 54.835 177 24 88 1 1 176 1821 1645 Heterolobosea sp. strain LPG3 18S ribosomal RNA gene, partial sequence blastn 10967 187 1 Eukaryota Discoba   Heterolobosea         Heterolobosea sp.
1050451 1050451 PRJNA1240805_P_NODE_1201_length_454_cov_16.288889_g1153_i0 PRJNA1240805 1201 454 16.288889 73.95155606 Trypanosomatidae 5654 Euglenozoa other_Eukaryota 540 7.71e-149   NTclustered gi|440222375|gb|JX030043.1| 5659 g1153 i0 89.062 135.960352422907 448 31 96 14 17 454 1321 1760 Leishmania amazonensis isolate LaPH8.rRNA.13 28S ribosomal RNA (LSU-alpha), partial sequence blastn 61726 540 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania amazonensis
1624146 1624146 PRJNA1240805_P_NODE_7042_length_173_cov_4.153226_g6993_i0 PRJNA1240805 7042 173 4.153226 7.18508098 Neovahlkampfia damariscottae 166956 Heterolobosea other_Eukaryota 71.3 4.01e-8   NTclustered gi|2874368068|gb|PQ819792.1| 166956 g6993 i0 100 0.445086705202312 38 0 22 0 120 157 229 192 Neovahlkampfia damariscottae strain CCAP:1588/7 small subunit ribosomal RNA gene and internal transcribed spacer 1, partial sequence blastn 77 71.3 1 Eukaryota Discoba   Heterolobosea     Neovahlkampfiidae Neovahlkampfia Neovahlkampfia damariscottae
2900266 2900266 PRJNA1240805_P_NODE_3703_length_240_cov_2.832461_g3654_i0 PRJNA1240805 3703 240 2.832461 6.7979064 Petalomonas cantuscygni 56452 Euglenozoa other_Eukaryota 93.5 1.27e-14   NTclustered gi|118574972|gb|EF108310.1| 56452 g3654 i0 80.159 29.8708333333333 126 23 52 2 24 148 226 102 Petalomonas cantuscygni strain CCAP 1259/1 large subunit ribosomal RNA (rnl) gene, partial sequence blastn 7169 93.5 1 Eukaryota Discoba   Euglenozoa Euglenida Petalomonadida Scytomonadidae Petalomonas Petalomonas cantuscygni
2900273 2900273 PRJNA1240805_P_NODE_4123_length_226_cov_14.169492_g4074_i0 PRJNA1240805 4123 226 14.169492 32.02305192 Neobodo sp. 2815825 Euglenozoa other_Eukaryota 182 2.46e-41   NTclustered gi|1996609214|gb|MW694333.1| 2815825 g4074 i0 90.58 1.64159292035398 138 11 60 1 91 226 665 802 Neobodo sp. isolate G08 small subunit ribosomal RNA gene, partial sequence blastn 371 182 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Neobodonida   Neobodo Neobodo sp.
6153271 6153271 PRJNA1240805_P_NODE_8925_length_154_cov_6.142857_g8876_i0 PRJNA1240805 8925 154 6.142857 9.45999978 Trypanosomatidae 5654 Euglenozoa other_Eukaryota 263 5.36e-66   NTclustered gi|440222381|gb|JX030049.1| 5659 g8876 i0 97.419 144.766233766234 155 3 100 1 1 154 710 556 Leishmania amazonensis isolate LaPH8.rRNA.25 28S ribosomal RNA (LSU-beta), partial sequence blastn 22294 263 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania amazonensis
9277662 9277662 PRJNA1240805_P_NODE_1748_length_367_cov_10.886792_g1699_i0 PRJNA1240805 1748 367 10.886792 39.95452664 Trachelomonas magdaleniana 472057 Euglenozoa other_Eukaryota 183 1.18e-41   NTclustered gi|157703460|gb|EF999911.1| 472057 g1699 i0 78.193 25.8474114441417 321 47 82 12 3 303 318 1 Trachelomonas magdaleniana large subunit ribosomal RNA gene, partial sequence blastn 9486 183 1 Eukaryota Discoba   Euglenozoa Euglenida Euglenales Euglenaceae Trachelomonas Trachelomonas magdaleniana
9978571 9978571 PRJNA1240805_P_NODE_3768_length_238_cov_5.507937_g3719_i0 PRJNA1240805 3768 238 5.507937 13.10889006 Leishmania 5658 Euglenozoa other_Eukaryota 246 9.139999999999999e-61   NTclustered gi|2593250474|emb|OY748421.1| 5660 g3719 i0 87.5 100.289915966387 216 24 89 3 14 226 990125 989910 Leishmania braziliensis isolate MHOM/BR/75/M2904 genome assembly, chromosome: 27 blastn 23869 246 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania braziliensis
10553488 10553488 PRJNA1240805_P_NODE_3109_length_265_cov_3.115741_g3060_i0 PRJNA1240805 3109 265 3.115741 8.25671365 Parafumarolamoeba stagnalis 2872509 Heterolobosea other_Eukaryota 313 1.01e-80   NTclustered gi|2086087549|gb|MZ919148.1| 2872509 g3060 i0 93.81 2.37358490566038 210 10 78 3 59 265 657 866 Parafumarolamoeba stagnalis small subunit ribosomal RNA gene, partial sequence blastn 629 313 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Parafumarolamoeba Parafumarolamoeba stagnalis
10553526 10553526 PRJNA1240805_P_NODE_6149_length_184_cov_7.014815_g6100_i0 PRJNA1240805 6149 184 7.014815 12.9072596 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 106 1.19e-18   NTclustered gi|290988613|ref|XM_002676947.1| 5762 g6100 i0 85.859 0.53804347826087 99 14 54 0 63 161 654 556 Naegleria gruberi rho family small GTPase (NAEGRDRAFT_79812), mRNA blastn 99 106 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
11828114 11828114 PRJNA1240805_P_NODE_4650_length_212_cov_7.687117_g4601_i0 PRJNA1240805 4650 212 7.687117 16.29668804 Entosiphon sp. 1921133 Euglenozoa other_Eukaryota 161 2.9699999999999997e-35   NTclustered gi|1547024950|gb|MK213406.1| 1921133 g4601 i0 82.796 0.877358490566038 186 27 86 5 1 183 456 273 Entosiphon sp. strain ESC small subunit ribosomal RNA, partial sequence blastn 186 161 1 Eukaryota Discoba   Euglenozoa Euglenida Heteronematales Peranemataceae Entosiphon Entosiphon sp.
13103306 13103306 PRJNA1240805_P_NODE_6551_length_179_cov_1.692308_g6502_i0 PRJNA1240805 6551 179 1.692308 3.02923132 Trypanosoma grayi 71804 Euglenozoa other_Eukaryota 102 1.48e-17   NTclustered gi|1273111679|gb|MG283141.1| 71804 g6502 i0 92.958 35.5251396648045 71 4 39 1 110 179 218 288 Trypanosoma grayi isolate 237-51-00211b-1-40-10_ITS1 internal transcribed spacer 2 and large subunit ribosomal RNA gene, partial sequence blastn 6359 102 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma grayi
13803920 13803920 PRJNA1240805_P_NODE_5191_length_200_cov_5.655629_g5142_i0 PRJNA1240805 5191 200 5.655629 11.311258 Diplonema 91373 Euglenozoa other_Eukaryota 100 6.12e-17   NTclustered gi|560190589|gb|KF633467.1| 91374 g5142 i0 86.813 25.52 91 10 46 2 87 177 2568 2480 Diplonema papillatum strain ATCC 50162 28S ribosomal RNA gene, complete sequence blastn 5104 100 1 Eukaryota Discoba   Euglenozoa Diplonemea   Diplonemidae Diplonema Diplonema papillatum
18201154 18201154 PRJNA1240805_P_NODE_2295_length_314_cov_5.162264_g2246_i0 PRJNA1240805 2295 314 5.162264 16.20950896 Petalomonas cantuscygni 56452 Euglenozoa other_Eukaryota 239 2.1e-58   NTclustered gi|118574972|gb|EF108310.1| 56452 g2246 i0 86.636 21.0127388535032 217 27 69 2 27 242 20 235 Petalomonas cantuscygni strain CCAP 1259/1 large subunit ribosomal RNA (rnl) gene, partial sequence blastn 6598 239 1 Eukaryota Discoba   Euglenozoa Euglenida Petalomonadida Scytomonadidae Petalomonas Petalomonas cantuscygni
20750958 20750958 PRJNA1240805_P_NODE_3977_length_231_cov_7.181319_g3928_i0 PRJNA1240805 3977 231 7.181319 16.58884689 uncultured kinetoplastid 204529 Euglenozoa other_Eukaryota 283 6.72e-72   NTclustered gi|375343691|gb|JN629775.1| 204529 g3928 i0 91.469 90.7186147186147 211 10 90 7 1 208 438 233 Uncultured kinetoplastid clone GB_2 18S ribosomal RNA gene, partial sequence blastn 20956 283 1 Eukaryota Discoba   Euglenozoa Kinetoplastea       uncultured kinetoplastid
22026220 22026220 PRJNA1240805_P_NODE_5878_length_188_cov_10.244604_g5829_i0 PRJNA1240805 5878 188 10.244604 19.25985552 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 254 4.12e-63   NTclustered gi|290989781|ref|XM_002677470.1| 5762 g5829 i0 94.512 0.872340425531915 164 9 87 0 25 188 936 1099 Naegleria gruberi DEAD/DEAH box helicase (NAEGRDRAFT_83135), mRNA blastn 164 254 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
24575810 24575810 PRJNA1240805_P_NODE_7980_length_164_cov_1.773913_g7931_i0 PRJNA1240805 7980 164 1.773913 2.90921732 Naegleria 5761 Heterolobosea other_Eukaryota 70.9 1.53e-12   NR XP_044557931.1 5763 g7931 i0 82.5 2.14024390243902 40 7 73.2 0 42 161 196 235 XP_044557931.1 uncharacterized protein FDP41_008425 [Naegleria fowleri] diamond 351 70.9 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
26724953 26724953 PRJNA1240805_P_NODE_2041_length_338_cov_7.204152_g1992_i0 PRJNA1240805 2041 338 7.204152 24.35003376 Euglena gracilis 3039 Euglenozoa other_Eukaryota 111 4.509999999999999e-28   NR QLA09622.1 3039 g1992 i0 62.8 0.763313609467456 86 29 73.7 1 28 276 97 182 QLA09622.1 60S large subunit ribosomal protein eL18 [Euglena gracilis] diamond 258 111 1 Eukaryota Discoba   Euglenozoa Euglenida Euglenales Euglenaceae Euglena Euglena gracilis
26820590 26820590 PRJNA1240805_P_NODE_5361_length_197_cov_4.506757_g5312_i0 PRJNA1240805 5361 197 4.506757 8.87831129 Diplonema papillatum 91374 Euglenozoa other_Eukaryota 52.8 9.31e-7   NR KAJ9462441.1 91374 g5312 i0 71.9 5.36040609137056 32 9 48.7 0 23 118 87 118 KAJ9462441.1 60S ribosomal protein L35a [Diplonema papillatum] diamond 1056 52.8 1 Eukaryota Discoba   Euglenozoa Diplonemea   Diplonemidae Diplonema Diplonema papillatum
27579034 27579034 PRJNA1240805_P_NODE_5144_length_201_cov_9.986842_g5095_i0 PRJNA1240805 5144 201 9.986842 20.07355242 Euglena gracilis 3039 Euglenozoa other_Eukaryota 82.4 7.35e-19   NR QLA09593.1 3039 g5095 i0 97.6 0.611940298507463 41 1 61.2 0 24 146 36 76 QLA09593.1 40S small subunit ribosomal protein eS28 [Euglena gracilis] diamond 123 82.4 1 Eukaryota Discoba   Euglenozoa Euglenida Euglenales Euglenaceae Euglena Euglena gracilis
28021281 28021281 PRJNA1240805_P_NODE_4365_length_219_cov_10.452941_g4316_i0 PRJNA1240805 4365 219 10.452941 22.89194079 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 75.9 3.21e-14   NR XP_044565141.1 5763 g4316 i0 48.5 2.79452054794521 68 35 93.2 0 16 219 219 286 XP_044565141.1 uncharacterized protein FDP41_013642 [Naegleria fowleri] diamond 612 75.9 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
28052624 28052624 PRJNA1240805_P_NODE_4045_length_229_cov_8.888889_g3996_i0 PRJNA1240805 4045 229 8.888889 20.35555581 Naegleria lovaniensis 51637 Heterolobosea other_Eukaryota 90.1 4.81e-19   NR XP_044548650.1 51637 g3996 i0 62.3 0.903930131004367 69 26 90.4 0 23 229 358 426 XP_044548650.1 uncharacterized protein C9374_004938 [Naegleria lovaniensis] diamond 207 90.1 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria lovaniensis
28747329 28747329 PRJNA1240805_P_NODE_447_length_724_cov_1.597037_g411_i0 PRJNA1240805 447 724 1.597037 11.56254788 Acrasis kona 1008807 Heterolobosea other_Eukaryota 67.4 5.05e-9   NR KAL0477121.1 1008807 g411 i0 32 0.505524861878453 122 80 50.6 2 318 683 208 326 KAL0477121.1 CBP20 [Acrasis kona] diamond 366 67.4 1 Eukaryota Discoba   Heterolobosea     Acrasidae Acrasis Acrasis kona
29031721 29031721 PRJNA1240805_P_NODE_4008_length_230_cov_8.502762_g3959_i0 PRJNA1240805 4008 230 8.502762 19.5563526 Bodo saltans 75058 Euglenozoa other_Eukaryota 62 3.27e-10   NR CUG91869.1 75058 g3959 i0 43.3 2.49130434782609 67 37 86.1 1 217 20 49 115 CUG91869.1 coatamer zeta subunit, putative [Bodo saltans] diamond 573 62 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Eubodonida Bodonidae Bodo Bodo saltans
29712264 29712264 PRJNA1240805_P_NODE_6530_length_179_cov_3.138462_g6481_i0 PRJNA1240805 6530 179 3.138462 5.61784698 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 55.1 7e-7   NR NP_044753.1 48483 g6481 i0 40.4 7.49162011173184 57 34 95.5 0 174 4 228 284 NP_044753.1 NADH dehydrogenase subunit 11 [Reclinomonas americana] diamond 1341 55.5 0.992792792792793 Eukaryota Discoba       Jakobida Histionidae Reclinomonas Reclinomonas americana
31559130 31559130 PRJNA1240805_P_NODE_7096_length_173_cov_1.435484_g7047_i0 PRJNA1240805 7096 173 1.435484 2.48338732 Diplonema papillatum 91374 Euglenozoa other_Eukaryota 51.6 1.08e-5   NR KAJ9468081.1 91374 g7047 i0 63.2 7.5606936416185 38 14 65.9 0 60 173 116 153 KAJ9468081.1 member 9 [Diplonema papillatum] diamond 1308 51.6 1 Eukaryota Discoba   Euglenozoa Diplonemea   Diplonemidae Diplonema Diplonema papillatum
31875085 31875085 PRJNA1240805_P_NODE_6897_length_175_cov_1.484127_g6848_i0 PRJNA1240805 6897 175 1.484127 2.59722225 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 46.6 3.7e-4   NR XP_044568412.1 5763 g6848 i0 48.1 0.891428571428571 52 25 85.7 1 152 3 59 110 XP_044568412.1 uncharacterized protein FDP41_007614 [Naegleria fowleri] diamond 156 46.6 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
32019930 32019930 PRJNA1240805_P_NODE_3838_length_236_cov_3.133690_g3789_i0 PRJNA1240805 3838 236 3.13369 7.3955084 Naegleria 5761 Heterolobosea other_Eukaryota 100 6.55e-23   NR XP_044568048.1 5763 g3789 i0 83.9 1.42372881355932 56 8 71.2 1 231 64 388 442 XP_044568048.1 uncharacterized protein FDP41_010400 [Naegleria fowleri] diamond 336 100 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
32886003 32886003 PRJNA1240805_P_NODE_3740_length_239_cov_2.705263_g3691_i0 PRJNA1240805 3740 239 2.705263 6.46557857 Euglena gracilis 3039 Euglenozoa other_Eukaryota 69.3 1.78e-12   NR Q84TU6.1 3039 g3691 i0 88.6 0.439330543933054 35 4 43.9 0 230 126 139 173 Q84TU6.1 RecName: Full=Cytochrome b6-f complex subunit 4, chloroplastic; AltName: Full=17 kDa polypeptide; Flags: Precursor [Euglena gracilis] diamond 105 69.3 1 Eukaryota Discoba   Euglenozoa Euglenida Euglenales Euglenaceae Euglena Euglena gracilis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;