RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1240805", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Peregrinibacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Candidatus Peregrinibacteriota · 3 ✖

tax_clade 1

  • Bacteria candidate phyla · 3 ✖

bioproject 1

  • PRJNA1240805 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
349328 349328 PRJNA1240805_P_NODE_5121_length_202_cov_2.986928_g5072_i0 PRJNA1240805 5121 202 2.986928 6.03359456 Candidatus Peribacter riflensis 1735162 Bacteria Bacteria 182 2.15e-41   NTclustered gi|946529367|gb|CP013062.1| 1735162 g5072 i0 86.391 6.76732673267327 169 19 83 3 1 167 1196204 1196038 MAG: Candidatus Peribacter riflensis, complete genome blastn 1367 182 1 Bacteria Bacteria candidate phyla   Candidatus Peregrinibacteriota Candidatus Peribacteria Candidatus Peribacterales   Candidatus Peribacter Candidatus Peribacter riflensis
349355 349355 PRJNA1240805_P_NODE_8141_length_162_cov_11.566372_g8092_i0 PRJNA1240805 8141 162 11.566372 18.73752264 Candidatus Peribacteria bacterium 2053688 Bacteria Bacteria 207 2.72e-49   NTclustered gi|2258833497|gb|CP060226.1| 2053688 g8092 i0 90.968 138.814814814815 155 12 95 2 9 162 813306 813153 MAG: Candidatus Peribacteria bacterium isolate HK-STAS-PATE-10 chromosome, complete genome blastn 22488 207 1 Bacteria Bacteria candidate phyla   Candidatus Peregrinibacteriota Candidatus Peribacteria       Candidatus Peribacteria bacterium
32381566 32381566 PRJNA1240805_P_NODE_4479_length_216_cov_4.323353_g4430_i0 PRJNA1240805 4479 216 4.323353 9.33844248 Candidatus Peregrinibacteria bacterium CG1 2030811 Bacteria Bacteria 80.1 1.77e-15   NR PIR52553.1 1974787 g4430 i0 68.6 1.40277777777778 51 16 70.8 0 3 155 694 744 PIR52553.1 MAG: hypothetical protein COU76_05870 [Candidatus Peregrinibacteria bacterium CG10_big_fil_rev_8_21_14_0_10_49_10] diamond 303 80.1 1 Bacteria Bacteria candidate phyla   Candidatus Peregrinibacteriota         Candidatus Peregrinibacteria bacterium CG10_big_fil_rev_8_21_14_0_10_49_10

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;