RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1240805", tax_clade = "Amoebozoa" and tax_phylum = "Discosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Discosea · 4 ✖

tax_clade 1

  • Amoebozoa · 4 ✖

bioproject 1

  • PRJNA1240805 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8002743 8002743 PRJNA1240805_P_NODE_3587_length_244_cov_2.825641_g3538_i0 PRJNA1240805 3587 244 2.825641 6.89456404 Vannella septentrionalis 197531 Discosea other_Eukaryota 307 4.25e-79   NTclustered gi|300078499|gb|GU001161.1| 197531 g3538 i0 90.213 82.266393442623 235 23 96 0 10 244 2171 2405 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 20073 307 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
13803912 13803912 PRJNA1240805_P_NODE_4371_length_219_cov_4.970588_g4322_i0 PRJNA1240805 4371 219 4.970588 10.88558772 Cochliopodium 313557 Discosea other_Eukaryota 152 1.8599999999999998e-32   NTclustered gi|861554067|gb|KP719191.1| 1678068 g4322 i0 96.703 39.310502283105 91 3 42 0 26 116 366 456 Cochliopodium sp. JvW-2015 strain A1HEB clone 1 small subunit ribosomal RNA gene, partial sequence blastn 8609 152 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium sp. JvW-2015
24575800 24575800 PRJNA1240805_P_NODE_6940_length_174_cov_3.720000_g6891_i0 PRJNA1240805 6940 174 3.72 6.4728 Cochliopodium actinophorum 703021 Discosea other_Eukaryota 54.7 0.004   NTclustered gi|330902844|gb|JF298248.1| 703021 g6891 i0 88.889 1.20114942528736 45 4 25 1 128 171 251 295 Cochliopodium actinophorum clone 1206 18S ribosomal RNA gene, partial sequence blastn 209 54.7 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium actinophorum
29694193 29694193 PRJNA1240805_P_NODE_4270_length_222_cov_2.086705_g4221_i0 PRJNA1240805 4270 222 2.086705 4.6324851 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 85.5 7.34e-18   NR XP_004344643.1 1257118 g4221 i0 72.5 0.689189189189189 51 14 68.9 0 200 48 252 302 XP_004344643.1 MC family transporter: phosphate, putative [Acanthamoeba castellanii str. Neff] diamond 153 85.5 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;