RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA1240804", tax_phylum = "Pisuviricota" and tax_superkingdom = "Viruses"

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analysis 2

tax_superkingdom 1

  • Viruses · 5 ✖

tax_phylum 1

  • Pisuviricota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1240804 · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1622455 1622455 PRJNA1240804_P_NODE_24882_length_286_cov_1.924051_g24516_i0 PRJNA1240804 24882 286 1.924051 5.50278586 Nepovirus lycopersici 3048377 Viruses Viruses 374 4.9699999999999996e-99   NTclustered gi|329754683|gb|HM776008.1| 12280 g24516 i0 91.791 15.048951048951 268 22 94 0 15 282 401 668 Tomato ringspot virus isolate RIB9001 3' UTR blastn 4304 374 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Secoviridae Nepovirus Nepovirus lycopersici
6152781 6152781 PRJNA1240804_P_NODE_144345_length_163_cov_0.912281_g143979_i0 PRJNA1240804 144345 163 0.912281 1.48701803 Viruses 10239 Viruses Viruses 263 5.77e-66   NTclustered gi|2806502719|gb|PQ054859.1| 2789443 g143979 i0 98.649 4.48466257668712 148 2 91 0 15 162 764 911 MAG: Skokie dicistro-like virus isolate QJ5MS4721 genomic sequence blastn 731 263 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Dicistroviridae   Skokie dicistro-like virus
6725092 6725092 PRJNA1240804_P_NODE_131926_length_165_cov_0.896552_g131560_i0 PRJNA1240804 131926 165 0.896552 1.4793108 Potyvirus batataplumei 3240478 Viruses Viruses 279 5.81e-71   NTclustered gi|2624773831|gb|OR829288.1| 12844 g131560 i0 100 52.9272727272727 151 0 92 0 15 165 2925 3075 Sweet potato feathery mottle virus isolate SPFMV_Bx_G0_10 polyprotein gene, complete cds blastn 8733 279 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Patatavirales Potyviridae Potyvirus Potyvirus batataplumei
13103182 13103182 PRJNA1240804_P_NODE_97891_length_175_cov_0.976190_g97525_i0 PRJNA1240804 97891 175 0.97619 1.7083325 Nepovirus lycopersici 3048377 Viruses Viruses 274 2.89e-69   NTclustered gi|2054359659|gb|MW057700.1| 12280 g97525 i0 98.089 36.0628571428571 157 3 90 0 15 171 7630 7786 Tomato ringspot virus isolate DSMZ PV-0380 segment RNA1 polyprotein 1 gene, complete cds blastn 6311 274 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Secoviridae Nepovirus Nepovirus lycopersici
32791422 32791422 PRJNA1240804_P_NODE_131520_length_165_cov_0.896552_g131154_i0 PRJNA1240804 131520 165 0.896552 1.4793108 Skokie dicistro-like virus 2789443 Viruses Viruses 93.2 2.24e-20   NR QPG92979.1 2789443 g131154 i0 89.6 0.872727272727273 48 5 87.3 0 144 1 588 635 QPG92979.1 polyprotein 2 [Skokie dicistro-like virus] diamond 144 93.2 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Dicistroviridae   Skokie dicistro-like virus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;