RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

27 rows where bioproject = "PRJNA1240804" and tax_phylum = "Oomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 27 ✖

tax_clade 1

bioproject 1

  • PRJNA1240804 · 27 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
348595 348595 PRJNA1240804_P_NODE_64481_length_199_cov_2.793333_g64115_i0 PRJNA1240804 64481 199 2.793333 5.55873267 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 289 1.21e-73   NTclustered gi|325194231|emb|FR825088.1| 890382 g64115 i0 92.929 1.63819095477387 198 14 99 0 2 199 1403 1206 Albugo laibachii Nc14, genomic contig CONTIG_1612_NC14_v4_1853_85 blastn 326 289 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
1050207 1050207 PRJNA1240804_P_NODE_5101_length_533_cov_34.735537_g4745_i0 PRJNA1240804 5101 533 34.735537 185.14041221 Pseudoperonospora 143452 SAR_Eukaryotes SAR_Eukaryotes 918 0   NTclustered gi|33520221|gb|AY273966.1| 162119 g4745 i0 97.749 99.9793621013133 533 12 100 0 1 533 534 2 Pseudoperonospora urticae large subunit ribosomal RNA gene, partial sequence blastn 53289 924 0.993506493506494 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Pseudoperonospora Pseudoperonospora urticae
2325387 2325387 PRJNA1240804_P_NODE_14222_length_356_cov_13.537459_g13857_i0 PRJNA1240804 14222 356 13.537459 48.19335404 Peronosporomycetes 3418804 SAR_Eukaryotes SAR_Eukaryotes 627 4.399999999999999e-175   NTclustered gi|1238675774|gb|MF783088.1| 4784 g13857 i0 100 95.2275280898876 339 0 95 0 4 342 380 42 Phytophthora capsici isolate CACAO small subunit ribosomal RNA gene, partial sequence blastn 33901 627 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora capsici
2325484 2325484 PRJNA1240804_P_NODE_2602_length_685_cov_26.759434_g2281_i0 PRJNA1240804 2602 685 26.759434 183.3021229 Pseudoperonospora 143452 SAR_Eukaryotes SAR_Eukaryotes 654 0   NTclustered gi|33520220|gb|AY273965.1| 162120 g2281 i0 87.741 89.6189781021898 571 56 82 11 124 685 177 742 Pseudoperonospora humuli large subunit ribosomal RNA gene, partial sequence blastn 61389 654 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Pseudoperonospora Pseudoperonospora humuli
2898602 2898602 PRJNA1240804_P_NODE_18743_length_319_cov_5.255556_g18377_i0 PRJNA1240804 18743 319 5.255556 16.76522364 Hyaloperonospora parasitica 123356 SAR_Eukaryotes SAR_Eukaryotes 584 2.38e-162   NTclustered gi|158519309|gb|EU054869.1| 123356 g18377 i0 99.688 99.6426332288401 320 0 100 1 1 319 432 751 Hyaloperonospora parasitica strain J661/01 (TUB 12425) large subunit ribosomal RNA gene, partial sequence blastn 31786 584 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Hyaloperonospora Hyaloperonospora parasitica
2899292 2899292 PRJNA1240804_P_NODE_50863_length_217_cov_5.833333_g50497_i0 PRJNA1240804 50863 217 5.833333 12.65833261 Phytophthora infestans 4787 SAR_Eukaryotes SAR_Eukaryotes 294 2.88e-75   NTclustered gi|1398129342|emb|LS479123.1| 4787 g50497 i0 99.383 96.3087557603687 162 1 93 0 2 163 228 389 Phytophthora infestans genomic DNA sequence contains 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2, 28S rRNA gene, strain 110P blastn 20899 294 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora infestans
3600605 3600605 PRJNA1240804_P_NODE_14323_length_355_cov_12.578431_g13958_i0 PRJNA1240804 14323 355 12.578431 44.65343005 Peronosporaceae 4777 SAR_Eukaryotes SAR_Eukaryotes 621 2.04e-173   NTclustered gi|1238675774|gb|MF783088.1| 4784 g13958 i0 99.415 96.3380281690141 342 2 96 0 14 355 627 968 Phytophthora capsici isolate CACAO small subunit ribosomal RNA gene, partial sequence blastn 34200 627 0.990430622009569 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora capsici
5451635 5451635 PRJNA1240804_P_NODE_3665_length_605_cov_7.929856_g3324_i0 PRJNA1240804 3665 605 7.929856 47.9756288 Plasmopara viticola 143451 SAR_Eukaryotes SAR_Eukaryotes 926 0   NTclustered gi|126565763|gb|EF426546.1| 143451 g3324 i0 95.093 95.5322314049587 591 24 98 4 1 591 608 23 Plasmopara viticola strain UASWS SG1 28S ribosomal RNA gene, complete sequence blastn 57797 926 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Plasmopara Plasmopara viticola
5452856 5452856 PRJNA1240804_P_NODE_97985_length_174_cov_4.704000_g97619_i0 PRJNA1240804 97985 174 4.704 8.18496 Plasmopara viticola 143451 SAR_Eukaryotes SAR_Eukaryotes 281 1.71e-71   NTclustered gi|389986087|gb|HM628770.1| 143451 g97619 i0 98.148 91.7241379310345 162 1 92 2 1 160 532 371 Plasmopara viticola strain TxIV 28S ribosomal RNA gene, partial sequence blastn 15960 281 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Plasmopara Plasmopara viticola
6727179 6727179 PRJNA1240804_P_NODE_9686_length_413_cov_7.436813_g9324_i0 PRJNA1240804 9686 413 7.436813 30.71403769 Hyaloperonospora parasitica 123356 SAR_Eukaryotes SAR_Eukaryotes 710 0   NTclustered gi|53693101|gb|AY742752.1| 123356 g9324 i0 98.75 97.6198547215496 400 4 97 1 1 399 980 581 Hyaloperonospora parasitica 18S ribosomal RNA gene, partial sequence blastn 40317 710 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Hyaloperonospora Hyaloperonospora parasitica
9275423 9275423 PRJNA1240804_P_NODE_128748_length_165_cov_2.198276_g128382_i0 PRJNA1240804 128748 165 2.198276 3.6271554 Hyaloperonospora parasitica 123356 SAR_Eukaryotes SAR_Eukaryotes 272 9.73e-69   NTclustered gi|53693101|gb|AY742752.1| 123356 g128382 i0 98.701 93.3333333333333 154 1 93 1 2 155 535 383 Hyaloperonospora parasitica 18S ribosomal RNA gene, partial sequence blastn 15400 272 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Hyaloperonospora Hyaloperonospora parasitica
9276269 9276269 PRJNA1240804_P_NODE_33128_length_256_cov_0.937198_g32762_i0 PRJNA1240804 33128 256 0.937198 2.39922688 Saprolegnia diclina 112098 SAR_Eukaryotes SAR_Eukaryotes 62.1 3.87e-5   NTclustered gi|669162737|ref|XM_008618709.1| 1156394 g32762 i0 91.304 0.359375 46 3 18 1 200 245 1257 1301 Saprolegnia diclina VS20 hypothetical protein, variant mRNA blastn 92 62.1 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia diclina
9276719 9276719 PRJNA1240804_P_NODE_52908_length_214_cov_16.581818_g52542_i0 PRJNA1240804 52908 214 16.581818 35.48509052 Pseudoperonospora sp. 2169586 SAR_Eukaryotes SAR_Eukaryotes 355 1.28e-93   NTclustered gi|1663822456|gb|MH730828.1| 2169586 g52542 i0 100 89.214953271028 192 0 90 0 8 199 121 312 Pseudoperonospora sp. voucher GLM49006 28S ribosomal RNA gene, partial sequence blastn 19092 355 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Pseudoperonospora Pseudoperonospora sp.
9277180 9277180 PRJNA1240804_P_NODE_7688_length_453_cov_59.952970_g7326_i0 PRJNA1240804 7688 453 59.95297 271.5869541 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 614 4.47e-171   NTclustered gi|325195057|emb|FR825852.1| 890382 g7326 i0 93.112 77.7704194260486 421 25 92 4 21 439 89 507 Albugo laibachii Nc14, genomic contig CONTIG_2891_NC14_v4_540_391 blastn 35230 614 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
11253173 11253173 PRJNA1240804_P_NODE_111409_length_168_cov_4.991597_g111043_i0 PRJNA1240804 111409 168 4.991597 8.38588296 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 213 6.12e-51   NTclustered gi|2440150|emb|X75631.1| 4788 g111043 i0 91.613 57.5833333333333 155 12 92 1 15 168 2775 2929 P.megasperma gene for 28S ribosomal RNA blastn 9674 213 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora megasperma
15652083 15652083 PRJNA1240804_P_NODE_8353_length_439_cov_11.294872_g7991_i0 PRJNA1240804 8353 439 11.294872 49.58448808 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 619 9.28e-173   NTclustered gi|695467755|ref|XM_009541406.1| 67593 g7991 i0 92.991 96.9271070615034 428 24 97 5 15 439 880 456 Phytophthora sojae hypothetical protein mRNA blastn 42551 619 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
16352508 16352508 PRJNA1240804_P_NODE_18393_length_322_cov_1.556777_g18027_i0 PRJNA1240804 18393 322 1.556777 5.01282194 Peronosporaceae 4777 SAR_Eukaryotes SAR_Eukaryotes 562 1.1299999999999997e-155   NTclustered gi|2248513641|ref|NC_063810.1| 4795 g18027 i0 100 94.416149068323 304 0 94 0 3 306 972 669 Phytophthora megakarya isolate Pm2 mitochondrion, complete genome blastn 30402 562 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora megakarya
18200342 18200342 PRJNA1240804_P_NODE_61515_length_203_cov_1.253247_g61149_i0 PRJNA1240804 61515 203 1.253247 2.54409141 Pseudoperonospora cubensis 143453 SAR_Eukaryotes SAR_Eukaryotes 344 2.6099999999999993e-90   NTclustered gi|927372602|ref|NC_027859.1| 143453 g61149 i0 99.471 96.9605911330049 189 1 93 0 1 189 1417 1229 Pseudoperonospora cubensis mitochondrion, complete genome blastn 19683 344 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Pseudoperonospora Pseudoperonospora cubensis
19474239 19474239 PRJNA1240804_P_NODE_3616_length_608_cov_43.495528_g3276_i0 PRJNA1240804 3616 608 43.495528 264.45281024 Plasmopara viticola 143451 SAR_Eukaryotes SAR_Eukaryotes 1033 0   NTclustered gi|126565763|gb|EF426546.1| 143451 g3276 i0 97.364 99.9210526315789 607 16 99 0 2 608 2 608 Plasmopara viticola strain UASWS SG1 28S ribosomal RNA gene, complete sequence blastn 60752 1033 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Plasmopara Plasmopara viticola
20176282 20176282 PRJNA1240804_P_NODE_22616_length_297_cov_1.838710_g22250_i0 PRJNA1240804 22616 297 1.83871 5.4609687 Pseudoperonospora 143452 SAR_Eukaryotes SAR_Eukaryotes 527 3.759999999999999e-145   NTclustered gi|927372602|ref|NC_027859.1| 143453 g22250 i0 98.653 99.1313131313131 297 4 100 0 1 297 6088 6384 Pseudoperonospora cubensis mitochondrion, complete genome blastn 29442 527 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Pseudoperonospora Pseudoperonospora cubensis
22025989 22025989 PRJNA1240804_P_NODE_90018_length_180_cov_1.083969_g89652_i0 PRJNA1240804 90018 180 1.083969 1.9511442 Pseudoperonospora cubensis 143453 SAR_Eukaryotes SAR_Eukaryotes 307 2.9500000000000003e-79   NTclustered gi|927372602|ref|NC_027859.1| 143453 g89652 i0 100 94.9722222222222 166 0 92 0 15 180 1817 1982 Pseudoperonospora cubensis mitochondrion, complete genome blastn 17095 307 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Pseudoperonospora Pseudoperonospora cubensis
22026104 22026104 PRJNA1240804_P_NODE_9638_length_414_cov_3.758904_g9276_i0 PRJNA1240804 9638 414 3.758904 15.56186256 Phytophthora megasperma 4788 SAR_Eukaryotes SAR_Eukaryotes 641 1.86e-179   NTclustered gi|2440150|emb|X75631.1| 4788 g9276 i0 95.729 70.6231884057971 398 17 96 0 15 412 3293 3690 P.megasperma gene for 28S ribosomal RNA blastn 29238 641 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora megasperma
27344745 27344745 PRJNA1240804_P_NODE_131643_length_165_cov_0.896552_g131277_i0 PRJNA1240804 131643 165 0.896552 1.4793108 Peronosporaceae 4777 SAR_Eukaryotes SAR_Eukaryotes 100 6.779999999999999e-23   NR XP_024578659.1 4781 g131277 i0 87.5 12.2181818181818 48 6 87.3 0 18 161 414 461 XP_024578659.1 myosin-like protein [Plasmopara halstedii] diamond 2016 100 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Plasmopara Plasmopara halstedii
28702384 28702384 PRJNA1240804_P_NODE_154347_length_152_cov_2.417476_g153981_i0 PRJNA1240804 154347 152 2.417476 3.67456352 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 62.4 1.24e-9   NR KAE9033809.1 129364 g153981 i0 75 31.4605263157895 36 9 71.1 0 145 38 828 863 KAE9033809.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Phytophthora rubi] diamond 4782 62.4 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora rubi
31590649 31590649 PRJNA1240804_P_NODE_136276_length_164_cov_0.904348_g135910_i0 PRJNA1240804 136276 164 0.904348 1.48313072 Phytophthora cactorum 29920 SAR_Eukaryotes SAR_Eukaryotes 45.1 0.00198   NR KAG2790828.1 29920 g135910 i0 56 0.914634146341463 50 19 86 1 15 155 72 121 KAG2790828.1 hypothetical protein Pcac1_g329 [Phytophthora cactorum] diamond 150 45.1 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cactorum
31956500 31956500 PRJNA1240804_P_NODE_139497_length_164_cov_0.904348_g139131_i0 PRJNA1240804 139497 164 0.904348 1.48313072 Peronosporomycetes 3418804 SAR_Eukaryotes SAR_Eukaryotes 47.8 2.16e-4   NR XP_067815137.1 4779 g139131 i0 52 1.8109756097561 50 22 91.5 2 12 161 282 329 XP_067815137.1 hypothetical protein CCR75_004047 [Bremia lactucae] diamond 297 48.1 0.993762993762994 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Bremia Bremia lactucae
32539806 32539806 PRJNA1240804_P_NODE_126739_length_166_cov_0.888889_g126373_i0 PRJNA1240804 126739 166 0.888889 1.47555574 Hyaloperonospora brassicae 162125 SAR_Eukaryotes SAR_Eukaryotes 108 1.19e-25   NR CAI5715846.1 162125 g126373 i0 94 0.903614457831325 50 3 90.4 0 16 165 464 513 CAI5715846.1 unnamed protein product [Hyaloperonospora brassicae] diamond 150 108 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Hyaloperonospora Hyaloperonospora brassicae

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;