RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA1240804", tax_phylum = "Kitrinoviricota" and tax_superkingdom = "Viruses"

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analysis 2

tax_superkingdom 1

  • Viruses · 7 ✖

tax_phylum 1

  • Kitrinoviricota · 7 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1240804 · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2900083 2900083 PRJNA1240804_P_NODE_91683_length_179_cov_0.969231_g91317_i0 PRJNA1240804 91683 179 0.969231 1.73492349 Tobamovirus fructirugosum 3432872 Viruses Viruses 300 4.9e-77   NTclustered gi|1805995756|gb|MN882044.1| 1761477 g91317 i0 99.398 92.7374301675978 166 0 92 1 1 165 6279 6114 Tomato brown rugose fruit virus isolate 39563388_A, complete genome blastn 16600 300 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus fructirugosum
5452894 5452894 PRJNA1240804_P_NODE_99725_length_173_cov_2.225806_g99359_i0 PRJNA1240804 99725 173 2.225806 3.85064438 Riponysc virus 3130951 Viruses Viruses 63.9 6.71e-6   NTclustered gi|2717321224|gb|PP173253.1| 3130951 g99359 i0 95 0.23121387283237 40 2 23 0 12 51 179 218 MAG: Riponysc virus isolate KCAP3_k141_285214 genomic sequence blastn 40 63.9 1 Viruses   Orthornavirae Kitrinoviricota Tolucaviricetes Tolivirales Tombusviridae   Riponysc virus
13101023 13101023 PRJNA1240804_P_NODE_128711_length_165_cov_2.301724_g128345_i0 PRJNA1240804 128711 165 2.301724 3.7978446 Chrocorelt virus 3129514 Viruses Viruses 233 4.5899999999999994e-57   NTclustered gi|2717317772|gb|PP171962.1| 3129514 g128345 i0 93.168 151.824242424242 161 8 96 3 7 165 2519 2678 MAG: Chrocorelt virus isolate CC1B_k141_7916 genomic sequence blastn 25051 233 1 Viruses   Orthornavirae Kitrinoviricota Magsaviricetes Nodamuvirales     Chrocorelt virus
13101459 13101459 PRJNA1240804_P_NODE_15471_length_344_cov_6.681356_g15106_i0 PRJNA1240804 15471 344 6.681356 22.98386464 Tombusviridae sp. 2583950 Viruses Viruses 302 2.93e-77   NTclustered gi|2171146054|gb|MZ218543.1| 2583950 g15106 i0 87.786 0.761627906976744 262 26 75 6 32 289 1 260 MAG: Tombusviridae sp. isolate 277-k141_9923 genomic sequence blastn 262 302 1 Viruses   Orthornavirae Kitrinoviricota Tolucaviricetes Tolivirales Tombusviridae   Tombusviridae sp.
16352271 16352271 PRJNA1240804_P_NODE_100573_length_173_cov_1.298387_g100207_i0 PRJNA1240804 100573 173 1.298387 2.24620951 Tobamovirus 12234 Viruses Viruses 289 1.02e-73   NTclustered gi|2837380181|gb|PP099897.1| 1761477 g100207 i0 98.182 95.3757225433526 165 3 95 0 1 165 3789 3625 Tomato brown rugose fruit virus isolate NPPO-NL 36648757, complete genome blastn 16500 289 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus fructirugosum
20749798 20749798 PRJNA1240804_P_NODE_43677_length_230_cov_1.165746_g43311_i0 PRJNA1240804 43677 230 1.165746 2.6812158 Tobamovirus capsici 3432865 Viruses Viruses 381 2.309999999999999e-101   NTclustered gi|1893169063|gb|MT130388.1| 12239 g43311 i0 98.611 89.9869565217391 216 2 93 1 2 216 3288 3073 Pepper mild mottle virus isolate M2-PMMoV 180k replication protein gene, partial cds; and movement protein and coat protein genes, complete cds blastn 20697 381 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus capsici
30705367 30705367 PRJNA1240804_P_NODE_89634_length_180_cov_1.343511_g89268_i0 PRJNA1240804 89634 180 1.343511 2.4183198 Grapevine-associated tymo-like virus 2 2814378 Viruses Viruses 86.3 3.73e-18   NR QXN75448.1 2814378 g89268 i0 76.6 0.783333333333333 47 11 78.3 0 148 8 1 47 QXN75448.1 MAG: RNA-dependent RNA polymerase, partial [Grapevine-associated tymo-like virus 2] diamond 141 86.3 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales     Grapevine-associated tymo-like virus 2

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;