RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA1240804" and tax_phylum = "Ignavibacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Ignavibacteriota · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1240804 · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3600980 3600980 PRJNA1240804_P_NODE_84023_length_184_cov_1.066667_g83657_i0 PRJNA1240804 84023 184 1.066667 1.96266728 Pseudomonadati 3379134 Bacteria Bacteria 71.3 4.33e-8   NTclustered gi|1938788434|gb|CP054181.1| 2053306 g83657 i0 93.617 1.05434782608696 47 3 26 0 131 177 1603151 1603197 Ignavibacteria bacterium isolate H1_BAC2 chromosome blastn 194 71.3 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria       Ignavibacteria bacterium
23299979 23299979 PRJNA1240804_P_NODE_148539_length_162_cov_0.920354_g148173_i0 PRJNA1240804 148539 162 0.920354 1.49097348 Ignavibacterium sp. 2651167 Bacteria Bacteria 276 7.350000000000001e-70   NTclustered gi|2314740639|dbj|AP026678.1| 2651167 g148173 i0 100 56.7222222222222 149 0 92 0 1 149 3218238 3218090 MAG: Ignavibacterium sp. KatS3mg037 DNA, complete genome blastn 9189 276 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales Ignavibacteriaceae Ignavibacterium Ignavibacterium sp.
28084078 28084078 PRJNA1240804_P_NODE_120165_length_167_cov_0.881356_g119799_i0 PRJNA1240804 120165 167 0.881356 1.47186452 Ignavibacteria bacterium 2053306 Bacteria Bacteria 100 4.419999999999999e-23   NR MBX7041711.1 2053306 g119799 i0 93.6 0.844311377245509 47 3 84.4 0 167 27 137 183 MBX7041711.1 hypothetical protein [Ignavibacteria bacterium] diamond 141 100 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria       Ignavibacteria bacterium
30673725 30673725 PRJNA1240804_P_NODE_72073_length_192_cov_1.279720_g71707_i0 PRJNA1240804 72073 192 1.27972 2.4570624 Ignavibacteriota bacterium 2026749 Bacteria Bacteria 91.7 1.69e-20   NR MEI9973197.1 2026749 g71707 i0 80.7 1.78125 57 11 89.1 0 8 178 16 72 MEI9973197.1 M14 family zinc carboxypeptidase [Ignavibacteriota bacterium] diamond 342 91.7 1 Bacteria FCB group Pseudomonadati Ignavibacteriota         Ignavibacteriota bacterium
30958354 30958354 PRJNA1240804_P_NODE_87394_length_181_cov_2.083333_g87028_i0 PRJNA1240804 87394 181 2.083333 3.77083273 Ignavibacteriota bacterium 2026749 Bacteria Bacteria 79.3 2.07e-15   NR RPI67065.1 2026749 g87028 i0 63.6 0.911602209944751 55 20 91.2 0 1 165 169 223 RPI67065.1 MAG: hypothetical protein EHM43_10055, partial [Ignavibacteriota bacterium] diamond 165 79.3 1 Bacteria FCB group Pseudomonadati Ignavibacteriota         Ignavibacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;