RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1240804" and tax_phylum = "Fidelibacterota"

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tax_superkingdom 1

tax_phylum 1

  • Fidelibacterota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1240804 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26616844 26616844 PRJNA1240804_P_NODE_35781_length_248_cov_1.412060_g35415_i0 PRJNA1240804 35781 248 1.41206 3.5019088 root 1 Root_unresolved Root_unresolved 47.8 7e-4   NR MAM99155.1 2026760 g35415 i0 42.4 1.76612903225806 66 34 78.6 2 212 18 1442 1504 MAM99155.1 hypothetical protein [Fidelibacterota bacterium] diamond 438 47.8 1 Bacteria FCB group Pseudomonadati Fidelibacterota         Fidelibacterota bacterium
27389687 27389687 PRJNA1240804_P_NODE_109263_length_169_cov_0.866667_g108897_i0 PRJNA1240804 109263 169 0.866667 1.46466723 Fidelibacterota bacterium 2026760 Bacteria Bacteria 44.3 0.0038   NR MBH49775.1 2026760 g108897 i0 43.8 0.85207100591716 48 27 85.2 0 9 152 142 189 MBH49775.1 hypothetical protein [Fidelibacterota bacterium] diamond 144 44.3 1 Bacteria FCB group Pseudomonadati Fidelibacterota         Fidelibacterota bacterium
32286855 32286855 PRJNA1240804_P_NODE_78279_length_188_cov_1.007194_g77913_i0 PRJNA1240804 78279 188 1.007194 1.89352472 Fidelibacterota bacterium 2026760 Bacteria Bacteria 41.6 0.0476   NR MBT4033662.1 2026760 g77913 i0 63.3 0.478723404255319 30 11 47.9 0 9 98 912 941 MBT4033662.1 T9SS type A sorting domain-containing protein [Fidelibacterota bacterium] diamond 90 41.6 1 Bacteria FCB group Pseudomonadati Fidelibacterota         Fidelibacterota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;