RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1240804" and tax_phylum = "Chlorobiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chlorobiota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1240804 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19473295 19473295 PRJNA1240804_P_NODE_128196_length_166_cov_0.888889_g127830_i0 PRJNA1240804 128196 166 0.888889 1.47555574 Prosthecochloris sp. CIB 2401 1868325 Bacteria Bacteria 106 1.05e-18   NTclustered gi|1044515116|gb|CP016432.1| 1868325 g127830 i0 92 15.3795180722892 75 6 45 0 35 109 197142 197216 Prosthecochloris sp. CIB 2401 chromosome, complete genome blastn 2553 106 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Prosthecochloris Prosthecochloris sp. CIB 2401
29000256 29000256 PRJNA1240804_P_NODE_57168_length_209_cov_0.931250_g56802_i0 PRJNA1240804 57168 209 0.93125 1.9463125 Chlorobiota bacterium 2268192 Bacteria Bacteria 42 0.0457   NR MCE2502946.1 2268192 g56802 i0 36 1.07655502392344 75 39 94.7 4 7 204 679 753 MCE2502946.1 T9SS type A sorting domain-containing protein [Chlorobiota bacterium] diamond 225 42 1 Bacteria FCB group Pseudomonadati Chlorobiota         Chlorobiota bacterium
30976486 30976486 PRJNA1240804_P_NODE_35314_length_249_cov_1.995000_g34948_i0 PRJNA1240804 35314 249 1.995 4.96755 Pseudomonadati 3379134 Bacteria Bacteria 77.4 1.95e-14   NR WP_006365608.1 84205 g34948 i0 70.6 19.6746987951807 51 15 61.4 0 90 242 1 51 WP_006365608.1 UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine transaminase [Chlorobium ferrooxidans] diamond 4899 77.4 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Chlorobium Chlorobium ferrooxidans
32146520 32146520 PRJNA1240804_P_NODE_62698_length_201_cov_3.394737_g62332_i0 PRJNA1240804 62698 201 3.394737 6.82342137 Pseudomonadati 3379134 Bacteria Bacteria 89.7 5.04e-19   NR MEI7707644.1 1095 g62332 i0 75.9 3.46268656716418 58 14 86.6 0 178 5 193 250 MEI7707644.1 UbiA family prenyltransferase [Chlorobium sp.] diamond 696 89.7 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Chlorobium Chlorobium sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;