RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1240804", tax_phylum = "Artverviricota" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 2 ✖

tax_phylum 1

  • Artverviricota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1240804 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16352722 16352722 PRJNA1240804_P_NODE_613_length_1158_cov_6.018034_g24_i1 PRJNA1240804 613 1158 6.018034 69.68883372 Gammaretrovirus 153135 Viruses Viruses 1814 0   NTclustered gi|331934|gb|J02255.1|MLMCG 11786 g24 i1 96.786 95.373920552677 1089 32 94 2 15 1103 4750 5835 Moloney murine leukemia virus, complete genome blastn 110443 1814 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
22727131 22727131 PRJNA1240804_P_NODE_38_length_2719_cov_8.939700_g23_i0 PRJNA1240804 38 2719 8.9397 243.070443 Gammaretrovirus 153135 Viruses Viruses 4970 0   NTclustered gi|331934|gb|J02255.1|MLMCG 11786 g23 i0 99.815 99.3501287237955 2706 5 99 0 14 2719 2044 4749 Moloney murine leukemia virus, complete genome blastn 270133 4970 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;