RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1240804", tax_kingdom = "Thermotogati" and tax_phylum = "Synergistota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Synergistota · 4 ✖

tax_kingdom 1

  • Thermotogati · 4 ✖

bioproject 1

  • PRJNA1240804 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2897918 2897918 PRJNA1240804_P_NODE_121983_length_167_cov_0.881356_g121617_i0 PRJNA1240804 121983 167 0.881356 1.47186452 Pyramidobacter sp. YE332 3068894 Bacteria Bacteria 132 1.7500000000000002e-26   NTclustered gi|2601021520|gb|CP133038.1| 3068894 g121617 i0 84.058 45.497005988024 138 21 83 1 7 144 1082276 1082412 Pyramidobacter sp. YE332 chromosome, complete genome blastn 7598 132 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Dethiosulfovibrionaceae Pyramidobacter Pyramidobacter sp. YE332
9275862 9275862 PRJNA1240804_P_NODE_15528_length_344_cov_1.793220_g15163_i0 PRJNA1240804 15528 344 1.79322 6.1686768 Fretibacterium fastidiosum 651822 Bacteria Bacteria 318 2.909999999999999e-82   NTclustered gi|2869663113|emb|OZ209244.1| 651822 g15163 i0 87.455 72.7616279069767 279 31 83 4 59 335 69561 69837 Fretibacterium fastidiosum strain SGP1 genome assembly, chromosome: Ff3 blastn 25030 318 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium Fretibacterium fastidiosum
19475408 19475408 PRJNA1240804_P_NODE_97496_length_175_cov_1.261905_g97130_i0 PRJNA1240804 97496 175 1.261905 2.20833375 Aminobacterium sp. MB27-C1 3070661 Bacteria Bacteria 252 1.3499999999999999e-62   NTclustered gi|2569590977|gb|CP133089.1| 3070661 g97130 i0 95.031 188.468571428571 161 7 92 1 1 161 1310514 1310673 Aminobacterium sp. MB27-C1 chromosome, complete genome blastn 32982 252 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Aminobacterium Aminobacterium sp. MB27-C1
30547470 30547470 PRJNA1240804_P_NODE_74653_length_190_cov_1.390071_g74287_i0 PRJNA1240804 74653 190 1.390071 2.6411349 Synergistaceae bacterium 2053624 Bacteria Bacteria 43.1 0.0136   NR MDR2528254.1 2053624 g74287 i0 38.9 0.852631578947368 54 31 82.1 1 163 8 266 319 MDR2528254.1 ABC transporter ATP-binding protein [Synergistaceae bacterium] diamond 162 43.1 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Synergistaceae   Synergistaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;