RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

9 rows where bioproject = "PRJNA1240804", tax_kingdom = "Metazoa" and tax_phylum = "Nematoda"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 9 ✖

tax_kingdom 1

  • Metazoa · 9 ✖

tax_clade 1

bioproject 1

  • PRJNA1240804 · 9 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5450994 5450994 PRJNA1240804_P_NODE_146405_length_162_cov_1.707965_g146039_i0 PRJNA1240804 146405 162 1.707965 2.7669033 Poikilolaimus oxycercus 96659 Nematoda Nematoda 230 5.799999999999999e-56   NTclustered gi|158821920|gb|EU195984.1| 96659 g146039 i0 95.775 88.9753086419753 142 6 88 0 7 148 2804 2663 Poikilolaimus oxycercus strain SB200 28S ribosomal RNA gene, partial sequence blastn 14414 230 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Poikilolaimus Poikilolaimus oxycercus
5452112 5452112 PRJNA1240804_P_NODE_59705_length_205_cov_1.717949_g59339_i0 PRJNA1240804 59705 205 1.717949 3.52179545 Meloidogyne incognita 6306 Nematoda Nematoda 54.7 0.005   NTclustered gi|1988425442|gb|MW627498.1| 6306 g59339 i0 88.636 0.214634146341463 44 5 21 0 96 139 269 226 Meloidogyne incognita isolate MC01 large subunit ribosomal RNA gene, partial sequence blastn 44 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Meloidogynidae Meloidogyne Meloidogyne incognita
7427793 7427793 PRJNA1240804_P_NODE_115386_length_168_cov_0.873950_g115020_i0 PRJNA1240804 115386 168 0.87395 1.468236 Rhabditida 6236 Nematoda Nematoda 285 1.28e-72   NTclustered gi|158821907|gb|EU195971.1| 473156 g115020 i0 100 13.7559523809524 154 0 92 0 15 168 426 579 Oscheius dolichura strain JU460 28S ribosomal RNA gene, partial sequence blastn 2311 285 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Oscheius Oscheius dolichura
10552426 10552426 PRJNA1240804_P_NODE_48609_length_221_cov_1.441860_g48243_i0 PRJNA1240804 48609 221 1.44186 3.1865106 Diploscapter sp. JU359 479134 Nematoda Nematoda 370 4.76e-98   NTclustered gi|158821895|gb|EU195959.1| 479134 g48243 i0 99.51 71.5203619909502 204 0 92 1 14 216 898 1101 Diploscapter sp. JU359 28S ribosomal RNA gene, partial sequence blastn 15806 370 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Diploscapter Diploscapter sp. JU359
20176657 20176657 PRJNA1240804_P_NODE_9776_length_412_cov_1.768595_g9414_i0 PRJNA1240804 9776 412 1.768595 7.2866114 Metazoa 33208 Nematoda Nematoda 730 0   NTclustered gi|158821895|gb|EU195959.1| 479134 g9414 i0 99.749 70.4417475728155 398 1 97 0 15 412 1568 1965 Diploscapter sp. JU359 28S ribosomal RNA gene, partial sequence blastn 29022 730 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Diploscapter Diploscapter sp. JU359
22026040 22026040 PRJNA1240804_P_NODE_92978_length_178_cov_1.131783_g92612_i0 PRJNA1240804 92978 178 1.131783 2.01457374 Diploscapter sp. JU359 479134 Nematoda Nematoda 263 6.39e-66   NTclustered gi|158821895|gb|EU195959.1| 479134 g92612 i0 95.732 8.90449438202247 164 6 92 1 1 164 3479 3317 Diploscapter sp. JU359 28S ribosomal RNA gene, partial sequence blastn 1585 263 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Diploscapter Diploscapter sp. JU359
24574589 24574589 PRJNA1240804_P_NODE_44300_length_229_cov_0.944444_g43934_i0 PRJNA1240804 44300 229 0.944444 2.16277676 Poikilolaimus oxycercus 96659 Nematoda Nematoda 361 2.9899999999999998e-95   NTclustered gi|158821920|gb|EU195984.1| 96659 g43934 i0 97.183 93.5021834061135 213 6 93 0 3 215 2016 1804 Poikilolaimus oxycercus strain SB200 28S ribosomal RNA gene, partial sequence blastn 21412 361 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Poikilolaimus Poikilolaimus oxycercus
27452892 27452892 PRJNA1240804_P_NODE_11723_length_384_cov_1.916418_g11358_i0 PRJNA1240804 11723 384 1.916418 7.35904512 Necator americanus 51031 Nematoda Nematoda 234 1.24e-75   NR ETN79591.1 51031 g11358 i0 86.4 0.9765625 125 17 97.7 0 1 375 28 152 ETN79591.1 Replication protein [Necator americanus] diamond 375 234 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ancylostomatidae Necator Necator americanus
28115645 28115645 PRJNA1240804_P_NODE_2485_length_697_cov_4.027778_g2166_i0 PRJNA1240804 2485 697 4.027778 28.07361266 Necator americanus 51031 Nematoda Nematoda 163 5.959999999999999e-46   NR ETN79591.1 51031 g2166 i0 83.7 0.395982783357245 92 14 39.6 1 689 414 151 241 ETN79591.1 Replication protein [Necator americanus] diamond 276 163 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ancylostomatidae Necator Necator americanus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;