RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1240804", tax_kingdom = "Fungi" and tax_phylum = "Blastocladiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Blastocladiomycota · 3 ✖

tax_kingdom 1

  • Fungi · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1240804 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10552554 10552554 PRJNA1240804_P_NODE_54269_length_213_cov_0.951220_g53903_i0 PRJNA1240804 54269 213 0.95122 2.0260986 Blastocladiella sp. 2169676 Fungi Fungi 89.8 1.43e-13   NTclustered gi|1866582625|gb|MT730800.1| 2169676 g53903 i0 91.045 14.0704225352113 67 5 31 1 1 67 4200 4135 Blastocladiella sp. isolate JEL0735 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 2997 89.8 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Blastocladiella Blastocladiella sp.
11827117 11827117 PRJNA1240804_P_NODE_49890_length_219_cov_1.335294_g49524_i0 PRJNA1240804 49890 219 1.335294 2.92429386 Catenaria sp. 2420186 Fungi Fungi 272 1.37e-68   NTclustered gi|1866582684|gb|MT730859.1| 2420186 g49524 i0 90.732 46.6027397260274 205 17 94 1 15 219 4097 4299 Catenaria sp. isolate JEL0871 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 10206 272 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Catenariaceae Catenaria Catenaria sp.
16926513 16926513 PRJNA1240804_P_NODE_93694_length_177_cov_1.671875_g93328_i0 PRJNA1240804 93694 177 1.671875 2.95921875 Catenomyces persicinus 281913 Fungi Fungi 204 3.8999999999999997e-48   NTclustered gi|82398336|gb|DQ273789.1| 281913 g93328 i0 89.441 91.4463276836158 161 17 91 0 5 165 2689 2529 Catenomyces sp. JEL342 isolate AFTOL-ID 47 28S ribosomal RNA gene, partial sequence blastn 16186 204 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Catenariaceae Catenomyces Catenomyces persicinus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;