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contig_metadata

15 rows where bioproject = "PRJNA1240804", tax_clade = "delta/epsilon subdivisions" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 15 ✖

tax_clade 1

  • delta/epsilon subdivisions · 15 ✖

bioproject 1

  • PRJNA1240804 · 15 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
347718 347718 PRJNA1240804_P_NODE_23361_length_293_cov_3.610656_g22995_i0 PRJNA1240804 23361 293 3.610656 10.57922208 uncultured delta proteobacterium DeepAnt-1F12 357894 Bacteria Bacteria 385 2.36e-102   NTclustered gi|82617822|gb|DQ267495.1| 357894 g22995 i0 91.756 147.996587030717 279 19 95 3 5 281 4093 3817 Uncultured delta proteobacterium DeepAnt-1F12 fosmid, complete sequence blastn 43363 385 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium DeepAnt-1F12
348084 348084 PRJNA1240804_P_NODE_38941_length_240_cov_1.696335_g38575_i0 PRJNA1240804 38941 240 1.696335 4.071204 uncultured delta proteobacterium 34034 Bacteria Bacteria 372 1.4599999999999997e-98   NTclustered gi|2874254016|emb|OY970341.1| 34034 g38575 i0 94.583 174.179166666667 240 13 100 0 1 240 593197 592958 MAG: uncultured delta proteobacterium isolate MFD01231.bin.c.2 genome assembly, chromosome: 1 blastn 41803 372 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
348179 348179 PRJNA1240804_P_NODE_43441_length_230_cov_2.215470_g43075_i0 PRJNA1240804 43441 230 2.21547 5.095581 uncultured delta proteobacterium 34034 Bacteria Bacteria 270 5.21e-68   NTclustered gi|2874254016|emb|OY970341.1| 34034 g43075 i0 91 164.621739130435 200 18 87 0 17 216 592708 592907 MAG: uncultured delta proteobacterium isolate MFD01231.bin.c.2 genome assembly, chromosome: 1 blastn 37863 270 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
1050087 1050087 PRJNA1240804_P_NODE_27901_length_273_cov_9.129464_g27535_i0 PRJNA1240804 27901 273 9.129464 24.92343672 Pseudomonadati 3379134 Bacteria Bacteria 488 1.6099999999999996e-133   NTclustered gi|2264046149|gb|ON921937.1| 34034 g27535 i0 100 95.5494505494506 264 0 97 0 8 271 157 420 Uncultured delta proteobacterium clone S156 16S ribosomal RNA gene, partial sequence blastn 26085 488 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
13100601 13100601 PRJNA1240804_P_NODE_10391_length_402_cov_3.002833_g10028_i0 PRJNA1240804 10391 402 3.002833 12.07138866 uncultured delta proteobacterium DeepAnt-1F12 357894 Bacteria Bacteria 460 5.4e-125   NTclustered gi|82617822|gb|DQ267495.1| 357894 g10028 i0 88.191 208.761194029851 398 32 96 8 15 400 4101 4495 Uncultured delta proteobacterium DeepAnt-1F12 fosmid, complete sequence blastn 83922 460 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium DeepAnt-1F12
13803801 13803801 PRJNA1240804_P_NODE_80451_length_186_cov_1.423358_g80085_i0 PRJNA1240804 80451 186 1.423358 2.64744588 root 1 Root_unresolved Root_unresolved 316 5.11e-82   NTclustered gi|339958901|gb|JN015508.1| 34034 g80085 i0 99.425 93.5483870967742 174 1 94 0 12 185 396 569 Uncultured delta proteobacterium clone ZBP-1 16S ribosomal RNA gene, partial sequence blastn 17400 316 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
14376024 14376024 PRJNA1240804_P_NODE_117272_length_167_cov_2.093220_g116906_i0 PRJNA1240804 117272 167 2.09322 3.4956774 Bradymonas sediminis 1548548 Bacteria Bacteria 174 2.87e-39   NTclustered gi|1406952946|gb|CP030032.1| 1548548 g116906 i0 93.966 3.70658682634731 116 6 69 1 46 160 97272 97157 Bradymonas sediminis strain FA350 chromosome, complete genome blastn 619 174 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Bradymonadaceae Bradymonas Bradymonas sediminis
18200760 18200760 PRJNA1240804_P_NODE_82275_length_185_cov_1.272059_g81909_i0 PRJNA1240804 82275 185 1.272059 2.35330915 uncultured delta proteobacterium DeepAnt-32C6 357895 Bacteria Bacteria 213 6.85e-51   NTclustered gi|82617838|gb|DQ267496.1| 357895 g81909 i0 89.349 291.540540540541 169 18 91 0 3 171 4137 3969 Uncultured delta proteobacterium DeepAnt-32C6 fosmid, complete sequence blastn 53935 213 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium DeepAnt-32C6
19472811 19472811 PRJNA1240804_P_NODE_101236_length_172_cov_2.439024_g100870_i0 PRJNA1240804 101236 172 2.439024 4.19512128 uncultured delta proteobacterium 34034 Bacteria Bacteria 213 6.25e-51   NTclustered gi|2874254016|emb|OY970341.1| 34034 g100870 i0 93.706 351.03488372093 143 7 83 2 1 142 594274 594133 MAG: uncultured delta proteobacterium isolate MFD01231.bin.c.2 genome assembly, chromosome: 1 blastn 60378 213 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
22025165 22025165 PRJNA1240804_P_NODE_49658_length_219_cov_2.400000_g49292_i0 PRJNA1240804 49658 219 2.4 5.256 uncultured delta proteobacterium 34034 Bacteria Bacteria 281 2.27e-71   NTclustered gi|2874254016|emb|OY970341.1| 34034 g49292 i0 91.707 211.041095890411 205 14 94 2 15 219 595343 595544 MAG: uncultured delta proteobacterium isolate MFD01231.bin.c.2 genome assembly, chromosome: 1 blastn 46218 281 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
24002153 24002153 PRJNA1240804_P_NODE_28559_length_271_cov_1.981982_g28193_i0 PRJNA1240804 28559 271 1.981982 5.37117122 root 1 Root_unresolved Root_unresolved 479 9.62e-131   NTclustered gi|195547051|dbj|AB451734.1| 34034 g28193 i0 98.524 99.90036900369 271 4 100 0 1 271 473 743 Uncultured delta proteobacterium gene for 16S rRNA, partial sequence, clone: COM-11 blastn 27073 479 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
26598334 26598334 PRJNA1240804_P_NODE_131981_length_165_cov_0.896552_g131615_i0 PRJNA1240804 131981 165 0.896552 1.4793108 Bradymonadaceae bacterium 2740543 Bacteria Bacteria 50.4 2.4e-5   NR MFU8806905.1 2740543 g131615 i0 55.3 2.01818181818182 38 16 69.1 1 39 152 123 159 MFU8806905.1 peptidoglycan DD-metalloendopeptidase family protein [Bradymonadaceae bacterium] diamond 333 50.4 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Bradymonadaceae   Bradymonadaceae bacterium
30123128 30123128 PRJNA1240804_P_NODE_77792_length_188_cov_1.330935_g77426_i0 PRJNA1240804 77792 188 1.330935 2.5021578 Myxococcota 2818505 Bacteria Bacteria 47 5.64e-4   NR PKN53875.1 2013741 g77426 i0 59.5 1.18085106382979 37 15 59 0 14 124 356 392 PKN53875.1 MAG: DNA polymerase IV [Deltaproteobacteria bacterium HGW-Deltaproteobacteria-14] diamond 222 47 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium HGW-Deltaproteobacteria-14
31021370 31021370 PRJNA1240804_P_NODE_120995_length_167_cov_0.881356_g120629_i0 PRJNA1240804 120995 167 0.881356 1.47186452 Deltaproteobacteria bacterium HGW-Deltaproteobacteria-8 2013758 Bacteria Bacteria 68.2 1.15e-12   NR PKN07926.1 2013758 g120629 i0 72.1 0.772455089820359 43 12 77.2 0 17 145 34 76 PKN07926.1 MAG: hypothetical protein CVU73_11035 [Deltaproteobacteria bacterium HGW-Deltaproteobacteria-8] diamond 129 68.2 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium HGW-Deltaproteobacteria-8
31780117 31780117 PRJNA1240804_P_NODE_128917_length_165_cov_1.784483_g128551_i0 PRJNA1240804 128917 165 1.784483 2.94439695 Deltaproteobacteria bacterium OttesenSCG-928-K17 2885211 Bacteria Bacteria 60.1 9.49e-9   NR MDL2259326.1 2885211 g128551 i0 57.1 2.61818181818182 49 21 89.1 0 5 151 32 80 MDL2259326.1 integrase arm-type DNA-binding domain-containing protein [Deltaproteobacteria bacterium OttesenSCG-928-K17] diamond 432 60.1 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium OttesenSCG-928-K17

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;