RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA1240804", tax_clade = "PVC group" and tax_phylum = "Lentisphaerota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Lentisphaerota · 5 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 5 ✖

bioproject 1

  • PRJNA1240804 · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10552045 10552045 PRJNA1240804_P_NODE_30769_length_263_cov_2.663551_g30403_i0 PRJNA1240804 30769 263 2.663551 7.00513913 Victivallales bacterium CCUG 44730 2094242 Bacteria Bacteria 89.8 1.83e-13   NTclustered gi|1359122976|gb|CP027227.1| 2094242 g30403 i0 93.333 0.228136882129278 60 4 23 0 157 216 344432 344373 Victivallales bacterium CCUG 44730 chromosome, complete genome blastn 60 89.8 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria Victivallales     Victivallales bacterium CCUG 44730
29743942 29743942 PRJNA1240804_P_NODE_151350_length_162_cov_0.920354_g150984_i0 PRJNA1240804 151350 162 0.920354 1.49097348 Pseudomonadati 3379134 Bacteria Bacteria 97.4 2.13e-22   NR NLG01193.1 1932692 g150984 i0 98 1.81481481481481 49 1 90.7 0 160 14 163 211 NLG01193.1 2-iminoacetate synthase ThiH [Lentisphaerota bacterium] diamond 294 97.4 1 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerota bacterium
30059915 30059915 PRJNA1240804_P_NODE_134091_length_165_cov_0.896552_g133725_i0 PRJNA1240804 134091 165 0.896552 1.4793108 Bacteria 2 Bacteria Bacteria 67.8 1.86e-11   NR NLG01828.1 1932692 g133725 i0 97 2.4 33 1 60 0 100 2 403 435 NLG01828.1 fused MFS/spermidine synthase [Lentisphaerota bacterium] diamond 396 67.8 1 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerota bacterium
30502401 30502401 PRJNA1240804_P_NODE_126053_length_166_cov_0.888889_g125687_i0 PRJNA1240804 126053 166 0.888889 1.47555574 Pseudomonadati 3379134 Bacteria Bacteria 100 6.019999999999999e-23   NR NLC79575.1 1932692 g125687 i0 98 3.6144578313253 50 1 90.4 0 2 151 559 608 NLC79575.1 ribonuclease R [Lentisphaerota bacterium] diamond 600 101 0.99009900990099 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerota bacterium
32728724 32728724 PRJNA1240804_P_NODE_43000_length_231_cov_1.692308_g42634_i0 PRJNA1240804 43000 231 1.692308 3.90923148 Lentisphaerota bacterium 1932692 Bacteria Bacteria 42.4 0.0331   NR MBT3374342.1 1932692 g42634 i0 36.2 1.22077922077922 47 30 61 0 75 215 46 92 MBT3374342.1 hypothetical protein [Lentisphaerota bacterium] diamond 282 42.4 1 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;