RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1240804", tax_clade = "Opisthokonta" and tax_phylum = "Cryptomycota"

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tax_superkingdom 1

tax_phylum 1

  • Cryptomycota · 2 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 2 ✖

bioproject 1

  • PRJNA1240804 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8002276 8002276 PRJNA1240804_P_NODE_76187_length_189_cov_1.371429_g75821_i0 PRJNA1240804 76187 189 1.371429 2.59200081 Cryptomycota sp. 2012228 Fungi Fungi 196 7.08e-46   NTclustered gi|2468790980|gb|OQ702912.1| 2012228 g75821 i0 89.308 71.978835978836 159 13 83 4 20 175 3882 3725 Cryptomycota sp. isolate PSC211 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 13604 196 1 Eukaryota Opisthokonta Fungi Cryptomycota         Cryptomycota sp.
20750284 20750284 PRJNA1240804_P_NODE_67117_length_196_cov_3.102041_g66751_i0 PRJNA1240804 67117 196 3.102041 6.08000036 Cryptomycota sp. 2012228 Fungi Fungi 235 1.5699999999999998e-57   NTclustered gi|2468790980|gb|OQ702912.1| 2012228 g66751 i0 90.11 75.9897959183673 182 16 92 2 16 195 2173 2354 Cryptomycota sp. isolate PSC211 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 14894 235 1 Eukaryota Opisthokonta Fungi Cryptomycota         Cryptomycota sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;