RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA1240804" and tax_clade = "Metamonada"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Metamonada · 6 ✖

bioproject 1

  • PRJNA1240804 · 6 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1622628 1622628 PRJNA1240804_P_NODE_31722_length_260_cov_1.625592_g31356_i0 PRJNA1240804 31722 260 1.625592 4.2265392 Tritrichomonas muris 5726 Parabasalia other_Eukaryota 438 1.5599999999999993e-118   NTclustered gi|62466089|gb|AY886846.1| 5726 g31356 i0 99.18 93.2115384615385 244 1 93 1 15 257 942 1185 Tritrichomonas muris clone 1-6 16S-like ribosomal RNA gene, partial sequence blastn 24235 438 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas muris
2897605 2897605 PRJNA1240804_P_NODE_102883_length_171_cov_2.040984_g102517_i0 PRJNA1240804 102883 171 2.040984 3.49008264 Tritrichomonas augusta 5725 Parabasalia other_Eukaryota 254 3.66e-63   NTclustered gi|2274983416|gb|OP038912.1| 5725 g102517 i0 96.711 6.64327485380117 152 5 89 0 15 166 724 875 Tritrichomonas augusta isolate T1 large subunit ribosomal RNA gene, partial sequence blastn 1136 254 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas augusta
2898774 2898774 PRJNA1240804_P_NODE_26383_length_280_cov_0.839827_g26017_i0 PRJNA1240804 26383 280 0.839827 2.3515156 Tritrichomonas muris 5726 Parabasalia other_Eukaryota 494 3.57e-135   NTclustered gi|62466089|gb|AY886846.1| 5726 g26017 i0 100 96.1535714285714 267 0 95 0 14 280 116 382 Tritrichomonas muris clone 1-6 16S-like ribosomal RNA gene, partial sequence blastn 26923 494 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas muris
10553354 10553354 PRJNA1240804_P_NODE_9449_length_418_cov_1.970190_g9087_i0 PRJNA1240804 9449 418 1.97019 8.2353942 Tritrichomonas augusta 5725 Parabasalia other_Eukaryota 730 0   NTclustered gi|2274983416|gb|OP038912.1| 5725 g9087 i0 99.257 40.122009569378 404 3 97 0 1 404 2171 1768 Tritrichomonas augusta isolate T1 large subunit ribosomal RNA gene, partial sequence blastn 16771 730 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas augusta
14377617 14377617 PRJNA1240804_P_NODE_5792_length_508_cov_1.535948_g5434_i0 PRJNA1240804 5792 508 1.535948 7.80261584 Tritrichomonas muris 5726 Parabasalia other_Eukaryota 898 0   NTclustered gi|62466089|gb|AY886846.1| 5726 g5434 i0 99.593 95.6220472440945 492 2 97 0 15 506 433 924 Tritrichomonas muris clone 1-6 16S-like ribosomal RNA gene, partial sequence blastn 48576 898 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas muris
24573029 24573029 PRJNA1240804_P_NODE_103000_length_171_cov_1.770492_g102634_i0 PRJNA1240804 103000 171 1.770492 3.02754132 Tritrichomonas augusta 5725 Parabasalia other_Eukaryota 211 2.23e-50   NTclustered gi|2274983416|gb|OP038912.1| 5725 g102634 i0 94.853 52.7543859649123 136 6 80 1 32 167 1 135 Tritrichomonas augusta isolate T1 large subunit ribosomal RNA gene, partial sequence blastn 9021 211 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas augusta

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;