RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1240804", tax_clade = "Candidatus Thermofonsia Clade 3" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 3 ✖

tax_kingdom 1

tax_clade 1

  • Candidatus Thermofonsia Clade 3 · 3 ✖

bioproject 1

  • PRJNA1240804 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2899715 2899715 PRJNA1240804_P_NODE_72263_length_192_cov_1.132867_g71897_i0 PRJNA1240804 72263 192 1.132867 2.17510464 Candidatus Roseilinea sp. 2838777 Bacteria Bacteria 54.7 0.005   NTclustered gi|2314722916|dbj|AP024676.1| 2838777 g71897 i0 100 0.151041666666667 29 0 15 0 154 182 3564568 3564540 MAG: Candidatus Roseilinea sp. KatS3mg053 DNA, complete genome blastn 29 54.7 1 Bacteria Candidatus Thermofonsia Clade 3 Bacillati Chloroflexota Candidatus Thermofontia     Candidatus Roseilinea Candidatus Roseilinea sp.
10550794 10550794 PRJNA1240804_P_NODE_102589_length_172_cov_0.926829_g102223_i0 PRJNA1240804 102589 172 0.926829 1.59414588 Candidatus Roseilinea sp. 2838777 Bacteria Bacteria 172 1.06e-38   NTclustered gi|2314722916|dbj|AP024676.1| 2838777 g102223 i0 86.25 0.930232558139535 160 21 92 1 1 159 3495862 3495703 MAG: Candidatus Roseilinea sp. KatS3mg053 DNA, complete genome blastn 160 172 1 Bacteria Candidatus Thermofonsia Clade 3 Bacillati Chloroflexota Candidatus Thermofontia     Candidatus Roseilinea Candidatus Roseilinea sp.
22026031 22026031 PRJNA1240804_P_NODE_92258_length_178_cov_1.550388_g91892_i0 PRJNA1240804 92258 178 1.550388 2.75969064 Candidatus Roseilinea sp. 2838777 Bacteria Bacteria 176 8.56e-40   NTclustered gi|2314722916|dbj|AP024676.1| 2838777 g91892 i0 85.882 0.955056179775281 170 18 93 5 2 166 3496229 3496061 MAG: Candidatus Roseilinea sp. KatS3mg053 DNA, complete genome blastn 170 176 1 Bacteria Candidatus Thermofonsia Clade 3 Bacillati Chloroflexota Candidatus Thermofontia     Candidatus Roseilinea Candidatus Roseilinea sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;