RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

8 rows where bioproject = "PRJNA1240804", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Minisyncoccota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Minisyncoccota · 8 ✖

tax_clade 1

  • Bacteria candidate phyla · 8 ✖

bioproject 1

  • PRJNA1240804 · 8 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26978576 26978576 PRJNA1240804_P_NODE_54302_length_213_cov_0.908537_g53936_i0 PRJNA1240804 54302 213 0.908537 1.93518381 Minisyncoccota bacterium 2053589 Bacteria Bacteria 88.6 3.97e-19   NR HTR18806.1 2053589 g53936 i0 70.7 0.816901408450704 58 17 81.7 0 177 4 160 217 HTR18806.1 hypothetical protein [Candidatus Paceibacterota bacterium] diamond 174 88.6 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
27231548 27231548 PRJNA1240804_P_NODE_67223_length_196_cov_2.149660_g66857_i0 PRJNA1240804 67223 196 2.14966 4.2133336 Minisyncoccota bacterium 2053589 Bacteria Bacteria 43.9 7.96e-4   NR MEX0917185.1 2053589 g66857 i0 57.1 0.535714285714286 35 15 53.6 0 183 79 25 59 MEX0917185.1 helix-turn-helix domain-containing protein [Candidatus Paceibacterota bacterium] diamond 105 43.9 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
27231575 27231575 PRJNA1240804_P_NODE_92023_length_178_cov_1.906977_g91657_i0 PRJNA1240804 92023 178 1.906977 3.39441906 Minisyncoccota bacterium 2053589 Bacteria Bacteria 61.6 3.46e-9   NR MEZ0208986.1 2053589 g91657 i0 47.3 0.926966292134832 55 29 92.7 0 178 14 31 85 MEZ0208986.1 hypothetical protein [Candidatus Paceibacterota bacterium] diamond 165 61.6 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
27989520 27989520 PRJNA1240804_P_NODE_114745_length_168_cov_0.873950_g114379_i0 PRJNA1240804 114745 168 0.87395 1.468236 Minisyncoccota bacterium 2053589 Bacteria Bacteria 84 4.13e-17   NR MFA6554218.1 2053589 g114379 i0 82.7 0.928571428571429 52 9 92.9 0 168 13 193 244 MFA6554218.1 hypothetical protein [Candidatus Paceibacterota bacterium] diamond 156 84 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
30768658 30768658 PRJNA1240804_P_NODE_18514_length_321_cov_1.687500_g18148_i0 PRJNA1240804 18514 321 1.6875 5.416875 Minisyncoccota bacterium 2053589 Bacteria Bacteria 72.8 1.88e-14   NR MFA4890018.1 2053589 g18148 i0 53.5 0.663551401869159 71 32 65.4 1 98 307 1 71 MFA4890018.1 hypothetical protein [Candidatus Paceibacterota bacterium] diamond 213 72.8 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
31653547 31653547 PRJNA1240804_P_NODE_145797_length_163_cov_0.868421_g145431_i0 PRJNA1240804 145797 163 0.868421 1.41552623 Minisyncoccota bacterium 2053589 Bacteria Bacteria 99.4 5.489999999999999e-24   NR MDI9397760.1 2053589 g145431 i0 100 2.65030674846626 48 0 88.3 0 149 6 63 110 MDI9397760.1 isoprenyl transferase [Candidatus Paceibacterota bacterium] diamond 432 99.4 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
31906780 31906780 PRJNA1240804_P_NODE_153437_length_155_cov_2.735849_g153071_i0 PRJNA1240804 153437 155 2.735849 4.24056595 Minisyncoccota bacterium 2053589 Bacteria Bacteria 68.2 1.2e-11   NR MFA5433209.1 2053589 g153071 i0 63 1.76129032258065 46 17 89 0 145 8 315 360 MFA5433209.1 tape measure protein [Candidatus Paceibacterota bacterium] diamond 273 68.2 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
32286868 32286868 PRJNA1240804_P_NODE_93559_length_177_cov_1.960938_g93193_i0 PRJNA1240804 93559 177 1.960938 3.47086026 Minisyncoccota bacterium 2053589 Bacteria Bacteria 55.1 6.92e-7   NR HEY6022142.1 2053589 g93193 i0 48.1 0.88135593220339 52 27 88.1 0 13 168 26 77 HEY6022142.1 helix-turn-helix domain-containing protein [Candidatus Paceibacterota bacterium] diamond 156 55.1 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;