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contig_metadata

14 rows where bioproject = "PRJNA1240804", tax_clade = "Amoebozoa" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 14 ✖

tax_clade 1

  • Amoebozoa · 14 ✖

bioproject 1

  • PRJNA1240804 · 14 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1623542 1623542 PRJNA1240804_P_NODE_73622_length_191_cov_1.211268_g73256_i0 PRJNA1240804 73622 191 1.211268 2.31352188 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 76.8 9.75e-10   NTclustered gi|292559443|ref|NC_013986.1| 5778 g73256 i0 100 0.214659685863874 41 0 21 0 6 46 25518 25478 Hartmannella vermiformis mitochondrion, complete genome blastn 41 76.8 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
5451087 5451087 PRJNA1240804_P_NODE_151965_length_160_cov_3.387387_g151599_i0 PRJNA1240804 151965 160 3.387387 5.4198192 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 241 2.6400000000000007e-59   NTclustered gi|292559443|ref|NC_013986.1| 5778 g151599 i0 94.872 120.9125 156 5 96 3 1 154 27674 27828 Hartmannella vermiformis mitochondrion, complete genome blastn 19346 241 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
5451880 5451880 PRJNA1240804_P_NODE_48545_length_221_cov_1.651163_g48179_i0 PRJNA1240804 48545 221 1.651163 3.64907023 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 361 2.8699999999999998e-95   NTclustered gi|909719647|gb|KT185627.1| 5778 g48179 i0 97.183 76.5610859728507 213 6 96 0 1 213 26634 26422 Vermamoeba vermiformis isolate BCP-EM3VF21-2 mitochondrion, complete genome blastn 16920 361 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
6726043 6726043 PRJNA1240804_P_NODE_41646_length_234_cov_1.535135_g41280_i0 PRJNA1240804 41646 234 1.535135 3.5922159 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 381 2.3499999999999993e-101   NTclustered gi|909719647|gb|KT185627.1| 5778 g41280 i0 98.611 76.7692307692308 216 2 92 1 1 215 19677 19462 Vermamoeba vermiformis isolate BCP-EM3VF21-2 mitochondrion, complete genome blastn 17964 381 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
9275709 9275709 PRJNA1240804_P_NODE_14528_length_353_cov_3.148026_g14163_i0 PRJNA1240804 14528 353 3.148026 11.11253178 uncultured Rhizamoeba 1260765 Tubulinea other_Eukaryota 348 3.8e-91   NTclustered gi|511487963|gb|JX898537.1| 1260765 g14163 i0 85.38 4.85552407932011 342 43 96 7 1 339 538 201 Uncultured Rhizamoeba clone HCA_D03-34 28S ribosomal RNA gene, partial sequence blastn 1714 348 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae   uncultured Rhizamoeba
11826913 11826913 PRJNA1240804_P_NODE_39470_length_239_cov_1.294737_g39104_i0 PRJNA1240804 39470 239 1.294737 3.09442143 Centropyxis laevigata 318528 Tubulinea other_Eukaryota 110 1.26e-19   NTclustered gi|61655689|gb|AY848965.1| 318528 g39104 i0 77.027 38.4560669456067 222 31 89 19 14 226 2103 1893 Centropyxis laevigata small subunit ribosomal RNA gene, partial sequence blastn 9191 110 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Centropyxidae Centropyxis Centropyxis laevigata
12528944 12528944 PRJNA1240804_P_NODE_67970_length_196_cov_0.870748_g67604_i0 PRJNA1240804 67970 196 0.870748 1.70666608 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 111 2.76e-20   NTclustered gi|423291978|gb|JQ519434.1| 5778 g67604 i0 83.761 8.12244897959184 117 19 60 0 15 131 583 699 Vermamoeba vermiformis clone JG10.93_e2 actin gene, partial cds blastn 1592 111 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
13101999 13101999 PRJNA1240804_P_NODE_3871_length_592_cov_13.314917_g3530_i0 PRJNA1240804 3871 592 13.314917 78.82430864 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 996 0   NTclustered gi|300078496|gb|GU001158.1| 5778 g3530 i0 97.751 30.2922297297297 578 13 98 0 15 592 1222 1799 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 17933 996 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
16925365 16925365 PRJNA1240804_P_NODE_36714_length_245_cov_3.744898_g36348_i0 PRJNA1240804 36714 245 3.744898 9.1750001 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 418 1.8899999999999995e-112   NTclustered gi|909719645|gb|KT185625.1| 5778 g36348 i0 99.138 1.89387755102041 232 2 95 0 14 245 6063 6294 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 464 418 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
18199977 18199977 PRJNA1240804_P_NODE_43735_length_230_cov_1.066298_g43369_i0 PRJNA1240804 43735 230 1.066298 2.4524854 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 313 8.53e-81   NTclustered gi|909719647|gb|KT185627.1| 5778 g43369 i0 93.75 65.4086956521739 208 13 90 0 9 216 20693 20486 Vermamoeba vermiformis isolate BCP-EM3VF21-2 mitochondrion, complete genome blastn 15044 313 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
19475239 19475239 PRJNA1240804_P_NODE_87276_length_181_cov_2.560606_g86910_i0 PRJNA1240804 87276 181 2.560606 4.63469686 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 255 1.09e-63   NTclustered gi|292559443|ref|NC_013986.1| 5778 g86910 i0 94.048 54.1049723756906 168 10 93 0 14 181 27062 27229 Hartmannella vermiformis mitochondrion, complete genome blastn 9793 255 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
20750414 20750414 PRJNA1240804_P_NODE_7437_length_459_cov_10.985366_g7076_i0 PRJNA1240804 7437 459 10.985366 50.42282994 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 754 0   NTclustered gi|909719645|gb|KT185625.1| 5778 g7076 i0 98.592 33.599128540305 426 6 93 0 20 445 7103 6678 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 15422 754 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
25276280 25276280 PRJNA1240804_P_NODE_27140_length_276_cov_7.907489_g26774_i0 PRJNA1240804 27140 276 7.907489 21.82466964 Tubulinea 555369 Tubulinea other_Eukaryota 479 9.82e-131   NTclustered gi|399764177|gb|JQ271688.1| 5778 g26774 i0 100 93.8442028985507 259 0 94 0 14 272 138 396 Hartmannella vermiformis strain ECH26 18S ribosomal RNA gene, partial sequence blastn 25901 479 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
25276513 25276513 PRJNA1240804_P_NODE_760_length_1074_cov_30.586341_g547_i0 PRJNA1240804 760 1074 30.586341 328.49730234 Vermamoeba 1260114 Tubulinea other_Eukaryota 1474 0   NTclustered gi|909719645|gb|KT185625.1| 5778 g547 i0 97.222 33.2718808193668 864 21 90 2 1 863 5535 4674 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 35734 1485 0.992592592592593 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;