RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1237888" and tax_superkingdom = "Archaea"

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tax_kingdom 2

analysis 2

tax_superkingdom 1

  • Archaea · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1237888 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16923884 16923884 PRJNA1237888_S_NODE_5574_length_175_cov_1.650794_g5524_i0 PRJNA1237888 5574 175 1.650794 2.8888895 Vulcanisaeta moutnovskia 985052 Archaea Archaea 52.8 0.015   NTclustered gi|323706731|gb|CP002529.1| 985053 g5524 i0 100 0.16 28 0 16 0 101 128 336100 336127 Vulcanisaeta moutnovskia 768-28, complete genome blastn 28 52.8 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Thermoproteales Thermoproteaceae Vulcanisaeta Vulcanisaeta moutnovskia
27705633 27705633 PRJNA1237888_S_NODE_6284_length_168_cov_0.873950_g6234_i0 PRJNA1237888 6284 168 0.87395 1.468236 Halodesulfurarchaeum sp. 1980530 Archaea Archaea 77.4 8.3e-15   NR MFB6086540.1 1980530 g6234 i0 71.2 0.928571428571429 52 15 92.9 0 168 13 310 361 MFB6086540.1 right-handed parallel beta-helix repeat-containing protein [Halodesulfurarchaeum sp.] diamond 156 77.4 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halobacteriaceae Halodesulfurarchaeum Halodesulfurarchaeum sp.
29126350 29126350 PRJNA1237888_S_NODE_6249_length_168_cov_0.873950_g6199_i0 PRJNA1237888 6249 168 0.87395 1.468236 archaeon 1906665 Archaea Archaea 79 1.88e-15   NR NCQ52386.1 1906665 g6199 i0 65.5 9.60714285714286 55 19 98.2 0 3 167 306 360 NCQ52386.1 elongation factor Tu [archaeon] diamond 1614 79 1 Archaea               archaeon

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;