RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA1237888" and tax_phylum = "Nitrospirota"

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tax_superkingdom 1

tax_phylum 1

  • Nitrospirota · 7 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1237888 · 7 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2897519 2897519 PRJNA1237888_S_NODE_5423_length_177_cov_3.296875_g5373_i0 PRJNA1237888 5423 177 3.296875 5.83546875 Nitrospira sp. 70125 Bacteria Bacteria 322 1.03e-83   NTclustered gi|2511635996|gb|CP126122.1| 70125 g5373 i0 99.435 27.9322033898305 177 1 100 0 1 177 752498 752322 MAG: Nitrospira sp. isolate bin_005 chromosome blastn 4944 322 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
10550708 10550708 PRJNA1237888_S_NODE_3609_length_214_cov_2.787879_g3559_i0 PRJNA1237888 3609 214 2.787879 5.96606106 Nitrospira defluvii 330214 Bacteria Bacteria 379 7.609999999999999e-101   NTclustered gi|470491451|ref|NR_077039.1| 330214 g3559 i0 98.598 24.1214953271028 214 3 100 0 1 214 1426 1639 Candidatus Nitrospira defluvii 23S ribosomal RNA, complete sequence blastn 5162 379 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira defluvii
15077367 15077367 PRJNA1237888_S_NODE_4532_length_193_cov_1.513889_g4482_i0 PRJNA1237888 4532 193 1.513889 2.92180577 Nitrospira 1234 Bacteria Bacteria 307 3.2200000000000003e-79   NTclustered gi|2863125063|dbj|AP038805.1| 70125 g4482 i0 95.337 227.20207253886 193 9 100 0 1 193 2095346 2095154 MAG: Nitrospira sp. AFB01 DNA, complete genome blastn 43850 307 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
15077371 15077371 PRJNA1237888_S_NODE_5352_length_178_cov_3.782946_g5302_i0 PRJNA1237888 5352 178 3.782946 6.73364388 Nitrospira 1234 Bacteria Bacteria 289 1.05e-73   NTclustered gi|2511635996|gb|CP126122.1| 70125 g5302 i0 96.045 35.6123595505618 177 7 99 0 1 177 751411 751587 MAG: Nitrospira sp. isolate bin_005 chromosome blastn 6339 289 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
17627559 17627559 PRJNA1237888_S_NODE_4094_length_202_cov_2.764706_g4044_i0 PRJNA1237888 4094 202 2.764706 5.58470612 Nitrospira 1234 Bacteria Bacteria 333 5.609999999999999e-87   NTclustered gi|2194436381|gb|CP092080.1| 70125 g4044 i0 96.517 236.336633663366 201 7 99 0 2 202 1558967 1558767 MAG: Nitrospira sp. isolate UBC1 chromosome blastn 47740 333 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
20748187 20748187 PRJNA1237888_S_NODE_6997_length_164_cov_0.904348_g6947_i0 PRJNA1237888 6997 164 0.904348 1.48313072 Nitrospira sp. 70125 Bacteria Bacteria 281 1.6000000000000001e-71   NTclustered gi|2290907019|gb|CP060499.1| 70125 g6947 i0 97.561 194.341463414634 164 4 100 0 1 164 2683411 2683248 MAG: Nitrospira sp. isolate DH1 chromosome, complete genome blastn 31872 281 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
23299089 23299089 PRJNA1237888_S_NODE_4059_length_203_cov_1.629870_g4009_i0 PRJNA1237888 4059 203 1.62987 3.3086361 Nitrospira defluvii 330214 Bacteria Bacteria 370 4.3e-98   NTclustered gi|470491451|ref|NR_077039.1| 330214 g4009 i0 99.507 95.3300492610837 203 1 100 0 1 203 87 289 Candidatus Nitrospira defluvii 23S ribosomal RNA, complete sequence blastn 19352 370 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira defluvii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;