RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA1237888" and tax_phylum = "Ciliophora"

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tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA1237888 · 6 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4877904 4877904 PRJNA1237888_S_NODE_4524_length_193_cov_1.958333_g4474_i0 PRJNA1237888 4524 193 1.958333 3.77958269 Chilodonella 151076 SAR_Eukaryotes SAR_Eukaryotes 161 2.6499999999999996e-35   NTclustered gi|1389430804|gb|MH341632.1| 1654720 g4474 i0 90.909 1.88082901554404 121 10 62 1 1 120 2962 3082 Chilodonella piscicola strain SC large subunit ribosomal RNA gene, partial sequence blastn 363 161 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella piscicola
5450150 5450150 PRJNA1237888_S_NODE_6045_length_169_cov_0.875000_g5995_i0 PRJNA1237888 6045 169 0.875 1.47875 Colpoda sp. 41631 SAR_Eukaryotes SAR_Eukaryotes 230 6.0699999999999995e-56   NTclustered gi|2651357788|gb|PP174303.1| 41631 g5995 i0 91.667 8.02366863905325 168 10 98 3 1 165 3396 3562 Colpoda sp. isolate CIL1 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 1356 230 1 Eukaryota Sar   Ciliophora Colpodea Colpodida Colpodidae Colpoda Colpoda sp.
17627551 17627551 PRJNA1237888_S_NODE_2454_length_259_cov_1.728571_g2404_i0 PRJNA1237888 2454 259 1.728571 4.47699889 Chilodonella 151076 SAR_Eukaryotes SAR_Eukaryotes 449 7.16e-122   NTclustered gi|1389430804|gb|MH341632.1| 1654720 g2404 i0 98.062 98.2934362934363 258 5 99 0 1 258 2313 2056 Chilodonella piscicola strain SC large subunit ribosomal RNA gene, partial sequence blastn 25458 449 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella piscicola
24001834 24001834 PRJNA1237888_S_NODE_559_length_517_cov_3.047009_g510_i0 PRJNA1237888 559 517 3.047009 15.75303653 Chilodonella 151076 SAR_Eukaryotes SAR_Eukaryotes 671 0   NTclustered gi|1389430804|gb|MH341632.1| 1654720 g510 i0 93.231 83.7214700193424 458 27 89 4 60 517 1953 1500 Chilodonella piscicola strain SC large subunit ribosomal RNA gene, partial sequence blastn 43284 671 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella piscicola
24572932 24572932 PRJNA1237888_S_NODE_3340_length_222_cov_1.560694_g3290_i0 PRJNA1237888 3340 222 1.560694 3.46474068 Colpoda sp. 41631 SAR_Eukaryotes SAR_Eukaryotes 294 2.96e-75   NTclustered gi|2651357788|gb|PP174303.1| 41631 g3290 i0 97.126 67.9864864864865 174 5 78 0 49 222 1569 1396 Colpoda sp. isolate CIL1 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 15093 294 1 Eukaryota Sar   Ciliophora Colpodea Colpodida Colpodidae Colpoda Colpoda sp.
25275948 25275948 PRJNA1237888_S_NODE_3700_length_212_cov_0.950920_g3650_i0 PRJNA1237888 3700 212 0.95092 2.0159504 Pseudochilodonopsis 1170555 SAR_Eukaryotes SAR_Eukaryotes 335 1.6499999999999996e-87   NTclustered gi|906358594|gb|KR611083.2| 1170556 g3650 i0 97.927 85.1839622641509 193 4 91 0 20 212 610 802 Pseudochilodonopsis fluviatilis isolate QZS2013071501 small subunit ribosomal RNA gene, partial sequence blastn 18059 335 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Pseudochilodonopsis Pseudochilodonopsis fluviatilis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;