RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1237888" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1237888 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27358081 27358081 PRJNA1237888_S_NODE_2423_length_261_cov_1.830189_g2373_i0 PRJNA1237888 2423 261 1.830189 4.77679329 Helicobacter pylori 210 Bacteria Bacteria 56.2 2.69e-8   NR GAA9195603.1 210 g2373 i0 68.2 1.54022988505747 66 19 75.9 2 64 261 1 64 GAA9195603.1 hypothetical protein Kyoto193A_4200 [Helicobacter pylori] diamond 402 56.2 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
29157839 29157839 PRJNA1237888_S_NODE_5569_length_175_cov_1.777778_g5519_i0 PRJNA1237888 5569 175 1.777778 3.1111115 Helicobacter pylori 210 Bacteria Bacteria 48.1 1.38e-5   NR GAA6899098.1 210 g5519 i0 80 0.857142857142857 25 5 42.9 0 175 101 8 32 GAA6899098.1 hypothetical protein Kyoto207A_0760 [Helicobacter pylori] diamond 150 48.1 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;