RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1237888", tax_kingdom = "Metazoa" and tax_phylum = "Nematoda"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 2 ✖

tax_kingdom 1

  • Metazoa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1237888 · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13100486 13100486 PRJNA1237888_S_NODE_3191_length_226_cov_9.209040_g3141_i0 PRJNA1237888 3191 226 9.20904 20.8124304 Turbatrix aceti 114909 Nematoda Nematoda 99 2.55e-16   NTclustered gi|1003466882|gb|KU180690.1| 114909 g3141 i0 89.61 32.7300884955752 77 8 34 0 1 77 964 888 Turbatrix aceti 28S ribosomal RNA gene, partial sequence blastn 7397 99 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Panagrolaimidae Turbatrix Turbatrix aceti
27881297 27881297 PRJNA1237888_S_NODE_5965_length_169_cov_14.516667_g5915_i0 PRJNA1237888 5965 169 14.516667 24.53316723 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 80.9 4.72e-17   NR NP_502077.1 6239 g5915 i0 97.6 475.171597633136 41 1 72.8 0 3 125 170 210 NP_502077.1 Small ribosomal subunit protein uS7 [Caenorhabditis elegans] diamond 80304 81.3 0.995079950799508 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;