RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA1237888" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 7 ✖

bioproject 1

  • PRJNA1237888 · 7 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
346543 346543 PRJNA1237888_S_NODE_3501_length_217_cov_3.607143_g3451_i0 PRJNA1237888 3501 217 3.607143 7.82750031 Fusobacterium varium 856 Bacteria Bacteria 377 2.78e-100   NTclustered gi|1243298346|dbj|AP017968.1| 856 g3451 i0 98.157 518.096774193548 217 3 100 1 1 217 1620677 1620892 Fusobacterium varium Fv113-g1 DNA, complete genome blastn 112427 377 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium varium
1049742 1049742 PRJNA1237888_S_NODE_3681_length_212_cov_3.147239_g3631_i0 PRJNA1237888 3681 212 3.147239 6.67214668 Fusobacterium 848 Bacteria Bacteria 377 2.71e-100   NTclustered gi|2705042081|gb|CP085192.1| 856 g3631 i0 99.052 509.400943396226 211 1 99 1 1 211 156669 156460 Fusobacterium varium strain SB069 chromosome blastn 107993 377 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium varium
8000021 8000021 PRJNA1237888_S_NODE_4467_length_194_cov_2.517241_g4417_i0 PRJNA1237888 4467 194 2.517241 4.88344754 Fusobacteriaceae bacterium 2053555 Bacteria Bacteria 305 1.16e-78   NTclustered gi|2892346784|dbj|AP035781.1| 2053555 g4417 i0 95.312 510.670103092784 192 9 99 0 1 192 3278 3469 Fusobacteriaceae bacterium 9N8 DNA, complete genome blastn 99070 305 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae   Fusobacteriaceae bacterium
13100501 13100501 PRJNA1237888_S_NODE_5371_length_178_cov_2.085271_g5321_i0 PRJNA1237888 5371 178 2.085271 3.71178238 uncultured Propionigenium sp. 259317 Bacteria Bacteria 307 2.91e-79   NTclustered gi|453201797|gb|JQ999705.1| 259317 g5321 i0 97.753 310.589887640449 178 4 100 0 1 178 320 143 Uncultured Propionigenium sp. clone GKJWQY101AW14Z 23S ribosomal RNA gene, partial sequence blastn 55285 307 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Propionigenium uncultured Propionigenium sp.
14375687 14375687 PRJNA1237888_S_NODE_7672_length_157_cov_2.194444_g7622_i0 PRJNA1237888 7672 157 2.194444 3.44527708 uncultured Propionigenium sp. 259317 Bacteria Bacteria 276 7.06e-70   NTclustered gi|453201797|gb|JQ999705.1| 259317 g7622 i0 98.125 168.146496815287 160 0 100 3 1 157 23 182 Uncultured Propionigenium sp. clone GKJWQY101AW14Z 23S ribosomal RNA gene, partial sequence blastn 26399 276 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Propionigenium uncultured Propionigenium sp.
21451644 21451644 PRJNA1237888_S_NODE_4477_length_194_cov_1.793103_g4427_i0 PRJNA1237888 4477 194 1.793103 3.47861982 Ilyobacter 167639 Bacteria Bacteria 235 1.55e-57   NTclustered gi|15029010|emb|AJ307977.1| 167644 g4427 i0 89.73 418.938144329897 185 18 95 1 11 194 901 1085 Ilyobacter tartaricus 23S rRNA gene, DSM 2382 T blastn 81274 235 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Ilyobacter Ilyobacter tartaricus
22023470 22023470 PRJNA1237888_S_NODE_6578_length_166_cov_1.034188_g6528_i0 PRJNA1237888 6578 166 1.034188 1.71675208 Leptotrichia sp. oral taxon 212 712357 Bacteria Bacteria 263 5.9e-66   NTclustered gi|922689899|gb|CP012410.1| 712357 g6528 i0 95.181 370.042168674699 166 8 100 0 1 166 52821 52986 Leptotrichia sp. oral taxon 212 strain W10393, complete genome blastn 61427 263 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. oral taxon 212

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;