RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1237888", tax_kingdom = "Bacillati" and tax_phylum = "Armatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 3 ✖

tax_kingdom 1

  • Bacillati · 3 ✖

bioproject 1

  • PRJNA1237888 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2325180 2325180 PRJNA1237888_S_NODE_6842_length_165_cov_0.896552_g6792_i0 PRJNA1237888 6842 165 0.896552 1.4793108 Fimbriimonas 1005038 Bacteria Bacteria 200 4.659999999999998e-47   NTclustered gi|663071213|gb|CP007139.1| 661478 g6792 i0 89.441 59.6545454545455 161 13 96 3 1 159 27439 27597 Fimbriimonas ginsengisoli Gsoil 348, complete genome blastn 9843 200 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas ginsengisoli
8000033 8000033 PRJNA1237888_S_NODE_6987_length_164_cov_0.904348_g6937_i0 PRJNA1237888 6987 164 0.904348 1.48313072 Fimbriimonas sp. 1936159 Bacteria Bacteria 220 3.55e-53   NTclustered gi|2778022393|emb|OZ123194.1| 1936159 g6937 i0 90.854 37.2865853658537 164 15 100 0 1 164 1688668 1688831 MAG: Fimbriimonas sp. isolate MsE-30jul19-LR-01 genome assembly, chromosome: 1 blastn 6115 220 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas sp.
30389821 30389821 PRJNA1237888_S_NODE_2353_length_265_cov_2.041667_g2303_i0 PRJNA1237888 2353 265 2.041667 5.41041755 Chthonomonadales bacterium 2282151 Bacteria Bacteria 46.6 0.00213   NR NUQ70362.1 2282151 g2303 i0 33.8 0.871698113207547 77 36 70.2 2 25 210 109 185 NUQ70362.1 apolipoprotein N-acyltransferase [Chthonomonadales bacterium] diamond 231 46.6 1 Bacteria   Bacillati Armatimonadota Chthonomonadia Chthonomonadales     Chthonomonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;