RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1237888", tax_clade = "Sar" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1237888 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13100496 13100496 PRJNA1237888_S_NODE_4591_length_192_cov_1.090909_g4541_i0 PRJNA1237888 4591 192 1.090909 2.09454528 Plasmodium vivax 5855 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.017   NTclustered gi|156101300|ref|XM_001616294.1| 5855 g4541 i0 100 0.145833333333333 28 0 15 0 159 186 3872 3845 Plasmodium vivax hypothetical protein, conserved (PVX_114780), partial mRNA blastn 28 52.8 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium vivax
18901310 18901310 PRJNA1237888_S_NODE_6135_length_168_cov_8.025210_g6085_i0 PRJNA1237888 6135 168 8.02521 13.4823528 Babesia 5864 SAR_Eukaryotes SAR_Eukaryotes 87.9 3.87e-13   NTclustered gi|363586005|gb|JN391431.1| 5865 g6085 i0 77.143 95.8630952380952 175 24 99 10 2 168 2575 2409 Babesia bovis isolate Shanxian 28S ribosomal RNA gene, partial sequence blastn 16105 87.9 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Babesiidae Babesia Babesia bovis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;