RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA1237888", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 8 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 8 ✖

bioproject 1

  • PRJNA1237888 · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2897507 2897507 PRJNA1237888_S_NODE_3283_length_224_cov_2.560000_g3233_i0 PRJNA1237888 3283 224 2.56 5.7344 Haloferula helveola 490095 Bacteria Bacteria 381 2.2299999999999993e-101   NTclustered gi|2057479829|gb|MZ443971.1| 490095 g3233 i0 97.321 100.540178571429 224 6 100 0 1 224 393 170 Haloferula helveola strain sediment_39 16S ribosomal RNA gene, partial sequence blastn 22521 381 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Haloferula Haloferula helveola
14375660 14375660 PRJNA1237888_S_NODE_1932_length_295_cov_1.439024_g1882_i0 PRJNA1237888 1932 295 1.439024 4.2451208 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 523 4.829999999999998e-144   NTclustered gi|2874254020|emb|OY970345.1| 412056 g1882 i0 98.644 248.159322033898 295 4 100 0 1 295 3892525 3892819 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04212.bin.2.122 genome assembly, chromosome: 1 blastn 73207 523 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
15649642 15649642 PRJNA1237888_S_NODE_4953_length_185_cov_1.529412_g4903_i0 PRJNA1237888 4953 185 1.529412 2.8294122 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 331 1.81e-86   NTclustered gi|2874253768|emb|OY969715.1| 412056 g4903 i0 98.919 205.454054054054 185 2 100 0 1 185 913341 913157 MAG: uncultured Verrucomicrobiae bacterium isolate MFD01916.bin.1.1 genome assembly, chromosome: 1 blastn 38009 331 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
16352246 16352246 PRJNA1237888_S_NODE_1833_length_304_cov_1.266667_g1783_i0 PRJNA1237888 1833 304 1.266667 3.85066768 Verrucomicrobiales 48461 Bacteria Bacteria 453 6.65e-123   NTclustered gi|2022020957|gb|CP059069.1| 2562705 g1783 i0 93.98 241.282894736842 299 18 98 0 6 304 3412369 3412667 Akkermansiaceae bacterium strain AJA081-3 chromosome, complete genome blastn 73350 453 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae   Akkermansiaceae bacterium
20748162 20748162 PRJNA1237888_S_NODE_3317_length_223_cov_1.603448_g3267_i0 PRJNA1237888 3317 223 1.603448 3.57568904 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 363 8.049999999999997e-96   NTclustered gi|2874254020|emb|OY970345.1| 412056 g3267 i0 95.964 176.690582959641 223 9 100 0 1 223 3892872 3893094 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04212.bin.2.122 genome assembly, chromosome: 1 blastn 39402 363 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
20748172 20748172 PRJNA1237888_S_NODE_4957_length_185_cov_1.463235_g4907_i0 PRJNA1237888 4957 185 1.463235 2.70698475 Luteolibacter sp. SL250 2995170 Bacteria Bacteria 259 8.67e-65   NTclustered gi|2381117106|gb|CP113054.1| 2995170 g4907 i0 91.892 311.935135135135 185 15 100 0 1 185 4718683 4718867 Luteolibacter sp. SL250 chromosome blastn 57708 259 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter sp. SL250
20748178 20748178 PRJNA1237888_S_NODE_6017_length_169_cov_1.300000_g5967_i0 PRJNA1237888 6017 169 1.3 2.197 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 292 7.64e-75   NTclustered gi|2874254020|emb|OY970345.1| 412056 g5967 i0 98.214 111.846153846154 168 2 99 1 1 167 3894288 3894121 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04212.bin.2.122 genome assembly, chromosome: 1 blastn 18902 292 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
30073318 30073318 PRJNA1237888_S_NODE_6852_length_165_cov_0.896552_g6802_i0 PRJNA1237888 6852 165 0.896552 1.4793108 Prosthecobacter sp. 1965333 Bacteria Bacteria 55.8 2.07e-7   NR MDB6006832.1 1965333 g6802 i0 81.5 0.490909090909091 27 5 49.1 0 164 84 215 241 MDB6006832.1 Endonuclease [Prosthecobacter sp.] diamond 81 55.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;