RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA1237888" and tax_clade = "Amoebozoa"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 7 ✖

bioproject 1

  • PRJNA1237888 · 7 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1049744 1049744 PRJNA1237888_S_NODE_4901_length_186_cov_1.510949_g4851_i0 PRJNA1237888 4901 186 1.510949 2.81036514 Flamella 490353 Evosea other_Eukaryota 344 2.34e-90   NTclustered gi|163943978|gb|EU186022.1| 490515 g4851 i0 100 101.413978494624 186 0 100 0 1 186 1505 1690 Flamella arnhemensis 18S ribosomal RNA gene, partial sequence blastn 18863 344 1 Eukaryota Amoebozoa   Evosea Variosea   Flamellidae Flamella Flamella arnhemensis
2325178 2325178 PRJNA1237888_S_NODE_62_length_1065_cov_13.092520_g46_i0 PRJNA1237888 62 1065 13.09252 139.435338 Eumycetozoa 142796 Evosea other_Eukaryota 348 1.23e-90   NTclustered gi|2250222329|gb|ON713412.1| 1182205 g46 i0 88.475 49.124882629108 295 24 54 7 562 852 746 458 Dianema subretisporum voucher MM31413 small subunit ribosomal RNA gene, partial sequence blastn 52318 351 0.991452991452991 Eukaryota Amoebozoa   Evosea Eumycetozoa Trichiida Dianemataceae Dianema Dianema subretisporum
4877895 4877895 PRJNA1237888_S_NODE_3024_length_233_cov_1.130435_g2974_i0 PRJNA1237888 3024 233 1.130435 2.63391355 Flamella 490353 Evosea other_Eukaryota 431 2.2899999999999996e-116   NTclustered gi|163943978|gb|EU186022.1| 490515 g2974 i0 100 97.1630901287554 233 0 100 0 1 233 994 762 Flamella arnhemensis 18S ribosomal RNA gene, partial sequence blastn 22639 431 1 Eukaryota Amoebozoa   Evosea Variosea   Flamellidae Flamella Flamella arnhemensis
6152573 6152573 PRJNA1237888_S_NODE_625_length_495_cov_7.008969_g575_i0 PRJNA1237888 625 495 7.008969 34.69439655 root 1 Root_unresolved Root_unresolved 75 1.03e-8   NTclustered gi|66826570|ref|XM_641548.1| 352472 g575 i0 92.308 9.02828282828283 52 4 11 0 220 271 1427 1376 Dictyostelium discoideum AX4 hypothetical protein (DDB_G0270238) mRNA, complete cds blastn 4469 75 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
9977916 9977916 PRJNA1237888_S_NODE_628_length_494_cov_9.408989_g578_i0 PRJNA1237888 628 494 9.408989 46.48040566 Trichiidae 208472 Evosea other_Eukaryota 200 1.63e-46   NTclustered gi|501417099|gb|JX481313.1| 647301 g578 i0 80.989 68.412955465587 263 41 71 9 235 494 1491 1747 Trichia decipiens voucher AMFD159 18S ribosomal RNA gene, partial sequence blastn 33796 202 0.99009900990099 Eukaryota Amoebozoa   Evosea Eumycetozoa Trichiida Trichiidae Trichia Trichia decipiens
14375659 14375659 PRJNA1237888_S_NODE_172_length_802_cov_7.857902_g147_i0 PRJNA1237888 172 802 7.857902 63.02037404 Arcyria sp. 'tenuissima' 3129282 Evosea other_Eukaryota 86.1 7.94e-12   NTclustered gi|2698738389|gb|PP491458.1| 3129282 g147 i0 88.889 7.74064837905237 72 5 9 3 726 795 3514 3444 Arcyria sp. 'tenuissima' voucher sc32644 internal transcribed spacer region, partial sequence blastn 6208 86.1 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Trichiida Trichiidae Arcyria Arcyria sp. 'tenuissima'
22023450 22023450 PRJNA1237888_S_NODE_2698_length_248_cov_1.281407_g2648_i0 PRJNA1237888 2698 248 1.281407 3.17788936 Phalansterium solitarium 136499 Evosea other_Eukaryota 337 5.53e-88   NTclustered gi|300078500|gb|GU001162.1| 136499 g2648 i0 91.2 52.1008064516129 250 18 100 3 1 248 2948 3195 Phalansterium solitarium 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 12921 337 1 Eukaryota Amoebozoa   Evosea Variosea     Phalansterium Phalansterium solitarium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;