RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

9 rows where bioproject = "PRJNA1237347", tax_phylum = "Promethearchaeota" and tax_superkingdom = "Archaea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

  • Archaea · 9 ✖

tax_phylum 1

  • Promethearchaeota · 9 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1237347 · 9 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28178135 28178135 PRJNA1237347_P_NODE_247586_length_377_cov_1.213816_g241013_i0 PRJNA1237347 247586 377 1.213816 4.57608632 Promethearchaeota archaeon 2053489 Archaea Archaea 44.7 0.0188   NR MBD3351332.1 2053489 g241013 i0 31.6 0.755968169761273 95 63 75.6 2 67 351 28 120 MBD3351332.1 hypothetical protein [Promethearchaeota archaeon] diamond 285 44.7 1 Archaea   Promethearchaeati Promethearchaeota         Promethearchaeota archaeon
28431137 28431137 PRJNA1237347_P_NODE_283346_length_346_cov_1.476190_g276773_i0 PRJNA1237347 283346 346 1.47619 5.1076174 Promethearchaeota archaeon 2053489 Archaea Archaea 169 2.24e-50   NR MBN1803085.1 2053489 g276773 i0 68.4 1.97687861271676 114 36 98.8 0 344 3 115 228 MBN1803085.1 ribose 5-phosphate isomerase A [Promethearchaeota archaeon] diamond 684 169 1 Archaea   Promethearchaeati Promethearchaeota         Promethearchaeota archaeon
28557306 28557306 PRJNA1237347_P_NODE_160527_length_501_cov_1.799065_g153966_i0 PRJNA1237347 160527 501 1.799065 9.01331565 Promethearchaeota archaeon 2053489 Archaea Archaea 65.5 7.33e-9   NR NHI92814.1 2053489 g153966 i0 38.1 3.5688622754491 105 59 59.9 3 39 338 3375 3478 NHI92814.1 hypothetical protein [Promethearchaeota archaeon] diamond 1788 65.5 1 Archaea   Promethearchaeati Promethearchaeota         Promethearchaeota archaeon
29220789 29220789 PRJNA1237347_P_NODE_461609_length_255_cov_1.016484_g455036_i0 PRJNA1237347 461609 255 1.016484 2.5920342 Promethearchaeum syntrophicum 2594042 Archaea Archaea 140 2.54e-36   NR WP_147663262.1 2594042 g455036 i0 69 0.988235294117647 84 26 98.8 0 253 2 166 249 WP_147663262.1 SIR2 family protein [Promethearchaeum syntrophicum] diamond 252 140 1 Archaea   Promethearchaeati Promethearchaeota Promethearchaeia Promethearchaeales Promethearchaeaceae Promethearchaeum Promethearchaeum syntrophicum
29441032 29441032 PRJNA1237347_P_NODE_217890_length_410_cov_1.195846_g211318_i0 PRJNA1237347 217890 410 1.195846 4.9029686 Candidatus Harpocratesius repetitus 3049170 Archaea Archaea 49.3 0.00111   NR MCF2139066.1 3049170 g211318 i0 28.3 0.929268292682927 127 73 89.3 3 369 4 6 119 MCF2139066.1 GTP-binding protein [Candidatus Harpocratesius repetitus] diamond 381 49.3 1 Archaea   Promethearchaeati Promethearchaeota Promethearchaeia Promethearchaeales Promethearchaeaceae Candidatus Harpocratesius Candidatus Harpocratesius repetitus
29712188 29712188 PRJNA1237347_P_NODE_349330_length_303_cov_3.143478_g342757_i0 PRJNA1237347 349330 303 3.143478 9.52473834 root 1 Root_unresolved Root_unresolved 47 0.00235   NR TFG18915.1 2053489 g342757 i0 44.1 2.9009900990099 59 33 58.4 0 115 291 2 60 TFG18915.1 MAG: 3-hydroxyacyl-CoA dehydrogenase family protein [Promethearchaeota archaeon] diamond 879 47.4 0.991561181434599 Archaea   Promethearchaeati Promethearchaeota         Promethearchaeota archaeon
31336762 31336762 PRJNA1237347_P_NODE_212256_length_417_cov_1.290698_g205684_i0 PRJNA1237347 212256 417 1.290698 5.38221066 Promethearchaeota archaeon CR_4 1849166 Archaea Archaea 78.2 2.1e-15   NR OLS12533.1 1849166 g205684 i0 35.4 0.913669064748201 127 78 91.4 3 381 1 7 129 OLS12533.1 MAG: hypothetical protein RBG13Loki_3844 [Promethearchaeota archaeon CR_4] diamond 381 78.2 1 Archaea   Promethearchaeati Promethearchaeota         Promethearchaeota archaeon CR_4
31969287 31969287 PRJNA1237347_P_NODE_111378_length_636_cov_1.777975_g104904_i0 PRJNA1237347 111378 636 1.777975 11.307921 Promethearchaeota archaeon 2053489 Archaea Archaea 166 3.4799999999999997e-46   NR MCK4285265.1 2053489 g104904 i0 43.3 1.02358490566038 217 112 98.6 6 635 9 9 222 MCK4285265.1 actin family protein [Promethearchaeota archaeon] diamond 651 166 1 Archaea   Promethearchaeati Promethearchaeota         Promethearchaeota archaeon
32444696 32444696 PRJNA1237347_P_NODE_451919_length_258_cov_2.043243_g445346_i0 PRJNA1237347 451919 258 2.043243 5.27156694 Candidatus Harpocratesius repetitus 3049170 Archaea Archaea 42.7 0.00775   NR MCF2140270.1 3049170 g445346 i0 44.4 0.883720930232558 45 25 52.3 0 164 30 4 48 MCF2140270.1 cold-shock protein [Candidatus Harpocratesius repetitus] diamond 228 42.7 1 Archaea   Promethearchaeati Promethearchaeota Promethearchaeia Promethearchaeales Promethearchaeaceae Candidatus Harpocratesius Candidatus Harpocratesius repetitus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;