RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA1237347", tax_kingdom = "Thermotogati" and tax_phylum = "Synergistota"

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tax_superkingdom 1

tax_phylum 1

  • Synergistota · 8 ✖

tax_kingdom 1

  • Thermotogati · 8 ✖

bioproject 1

  • PRJNA1237347 · 8 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16918331 16918331 PRJNA1237347_P_NODE_336654_length_311_cov_0.966387_g330081_i0 PRJNA1237347 336654 311 0.966387 3.00546357 Bacteria 2 Bacteria Bacteria 120 1.4499999999999998e-31   NR WP_085543844.1 561720 g330081 i0 55.6 6.04823151125402 90 39 86.8 1 11 280 113 201 WP_085543844.1 imidazole glycerol phosphate synthase subunit HisH [Dethiosulfovibrio salsuginis] diamond 1881 121 0.991735537190083 Bacteria   Thermotogati Synergistota Synergistia Synergistales Dethiosulfovibrionaceae Dethiosulfovibrio Dethiosulfovibrio salsuginis
28715445 28715445 PRJNA1237347_P_NODE_406727_length_277_cov_1.132353_g400154_i0 PRJNA1237347 406727 277 1.132353 3.13661781 Pyramidobacter sp. 1943581 Bacteria Bacteria 69.7 2.31e-12   NR MBP5212555.1 1943581 g400154 i0 43.8 2.92418772563177 89 35 96.4 2 1 267 50 123 MBP5212555.1 GNAT family N-acetyltransferase [Pyramidobacter sp.] diamond 810 69.7 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Dethiosulfovibrionaceae Pyramidobacter Pyramidobacter sp.
29207574 29207574 PRJNA1237347_P_NODE_503189_length_247_cov_1.287356_g496616_i0 PRJNA1237347 503189 247 1.287356 3.17976932 Bacteria candidate phyla 1783234 Bacteria Bacteria 50.4 7.44e-5   NR HOM98092.1 1872099 g496616 i0 50 2.67206477732794 44 20 53.4 1 3 134 735 776 HOM98092.1 hypothetical protein [Acetomicrobium sp.] diamond 660 50.4 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Acetomicrobiaceae Acetomicrobium Acetomicrobium sp.
29630405 29630405 PRJNA1237347_P_NODE_225930_length_400_cov_1.642202_g219358_i0 PRJNA1237347 225930 400 1.642202 6.568808 Synergistaceae bacterium 2053624 Bacteria Bacteria 56.6 3.14e-6   NR MBQ7168563.1 2053624 g219358 i0 36.1 1.4325 108 67 79.5 1 364 47 841 948 MBQ7168563.1 putative Ig domain-containing protein [Synergistaceae bacterium] diamond 573 56.6 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Synergistaceae   Synergistaceae bacterium
30609937 30609937 PRJNA1237347_P_NODE_254993_length_370_cov_1.471380_g248420_i0 PRJNA1237347 254993 370 1.47138 5.444106 Synergistaceae bacterium 2053624 Bacteria Bacteria 58.2 3.81e-7   NR MBQ9419517.1 2053624 g248420 i0 33 1.77567567567568 109 61 88.4 2 26 352 20 116 MBQ9419517.1 tRNA pseudouridine(38-40) synthase TruA [Synergistaceae bacterium] diamond 657 58.2 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Synergistaceae   Synergistaceae bacterium
30831645 30831645 PRJNA1237347_P_NODE_81754_length_775_cov_6.111111_g75634_i0 PRJNA1237347 81754 775 6.111111 47.36111025 Synergistaceae bacterium 2053624 Bacteria Bacteria 54.7 1.63e-4   NR MDR1377386.1 2053624 g75634 i0 50 0.209032258064516 54 27 20.9 0 592 753 219 272 MDR1377386.1 histidine ammonia-lyase [Synergistaceae bacterium] diamond 162 54.7 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Synergistaceae   Synergistaceae bacterium
32033250 32033250 PRJNA1237347_P_NODE_563018_length_232_cov_2.792453_g556444_i0 PRJNA1237347 563018 232 2.792453 6.47849096 Acetomicrobium mobile 97477 Bacteria Bacteria 112 7.62e-29   NR WP_303881963.1 97477 g556444 i0 70.1 0.995689655172414 77 23 99.6 0 2 232 80 156 WP_303881963.1 ABC transporter ATP-binding protein [Acetomicrobium mobile] diamond 231 112 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Acetomicrobiaceae Acetomicrobium Acetomicrobium mobile
32885731 32885731 PRJNA1237347_P_NODE_492000_length_249_cov_0.875000_g485427_i0 PRJNA1237347 492000 249 0.875 2.17875 Cloacibacillus sp. 2049023 Bacteria Bacteria 43.5 0.0218   NR MEG1824031.1 2049023 g485427 i0 33.3 0.975903614457831 81 44 86.7 3 219 4 413 492 MEG1824031.1 dihydroxy-acid dehydratase [Cloacibacillus sp.] diamond 243 43.5 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Synergistaceae Cloacibacillus Cloacibacillus sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;