RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1237347" and tax_clade = "SAR92 clade"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • SAR92 clade · 2 ✖

bioproject 1

  • PRJNA1237347 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30313311 30313311 PRJNA1237347_P_NODE_426372_length_269_cov_1.102041_g419799_i0 PRJNA1237347 426372 269 1.102041 2.96449029 Bacteria 2 Bacteria Bacteria 107 8.14e-28   NR EAS47412.1 314287 g419799 i0 60.2 9.1449814126394 83 31 92.6 1 19 267 22 102 EAS47412.1 hypothetical protein GB2207_01372 [gamma proteobacterium HTCC2207] diamond 2460 107 1 Bacteria SAR92 clade Pseudomonadati Pseudomonadota Gammaproteobacteria Cellvibrionales Porticoccaceae   gamma proteobacterium HTCC2207
32885594 32885594 PRJNA1237347_P_NODE_386280_length_285_cov_2.268868_g379707_i0 PRJNA1237347 386280 285 2.268868 6.4662738 SAR92 clade bacterium H921 2975452 Bacteria Bacteria 69.7 1.78e-11   NR MCT2529775.1 2975452 g379707 i0 46.8 0.831578947368421 79 41 82.1 1 234 1 3 81 MCT2529775.1 CoA transferase [SAR92 clade bacterium H921] diamond 237 69.7 1 Bacteria SAR92 clade Pseudomonadati Pseudomonadota Gammaproteobacteria Cellvibrionales Porticoccaceae   SAR92 clade bacterium H921

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;