RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1237347" and tax_clade = "SAR86 cluster"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • SAR86 cluster · 2 ✖

bioproject 1

  • PRJNA1237347 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28778142 28778142 PRJNA1237347_P_NODE_224467_length_402_cov_1.012158_g217895_i0 PRJNA1237347 224467 402 1.012158 4.06887516 SAR86 cluster bacterium 2030880 Bacteria Bacteria 44.7 0.0405   NR RZO27104.1 2030880 g217895 i0 32.9 0.567164179104478 76 29 56.7 2 15 242 365 418 RZO27104.1 MAG: type I phosphodiesterase/nucleotide pyrophosphatase [SAR86 cluster bacterium] diamond 228 44.7 1 Bacteria SAR86 cluster Pseudomonadati Pseudomonadota Gammaproteobacteria       SAR86 cluster bacterium
29567421 29567421 PRJNA1237347_P_NODE_170630_length_482_cov_1.112469_g164060_i0 PRJNA1237347 170630 482 1.112469 5.36210058 SAR86 cluster bacterium 2030880 Bacteria Bacteria 72.4 2.2e-11   NR RCL41477.1 2030880 g164060 i0 33.6 2.89419087136929 152 96 94 2 481 29 87 234 RCL41477.1 MAG: hypothetical protein DBW96_02160 [SAR86 cluster bacterium] diamond 1395 72.4 1 Bacteria SAR86 cluster Pseudomonadati Pseudomonadota Gammaproteobacteria       SAR86 cluster bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;