RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

27 rows where bioproject = "PRJNA1237347", tax_clade = "PVC group" and tax_phylum = "Lentisphaerota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Lentisphaerota · 27 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 27 ✖

bioproject 1

  • PRJNA1237347 · 27 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1615836 1615836 PRJNA1237347_P_NODE_335982_length_311_cov_1.399160_g329409_i0 PRJNA1237347 335982 311 1.39916 4.3513876 Bacteria 2 Bacteria Bacteria 136 1.42e-35   NR QSH41931.1 1932692 g329409 i0 78 11.1511254019293 82 18 79.1 0 62 307 274 355 QSH41931.1 nucleotide sugar dehydrogenase [Lentisphaerota bacterium] diamond 3468 136 1 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerota bacterium
5447573 5447573 PRJNA1237347_P_NODE_490525_length_249_cov_0.875000_g483952_i0 PRJNA1237347 490525 249 0.875 2.17875 Victivallaceae bacterium 2793042 Bacteria Bacteria 52.8 0.023   NTclustered gi|2621704067|emb|OY761536.1| 2793042 g483952 i0 96.875 0.1285140562249 32 0 12 1 62 92 2351350 2351319 MAG: Victivallaceae bacterium isolate e353ef71-700a-4510-b67c-5bed4426050c genome assembly, chromosome: 1 blastn 32 52.8 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria Victivallales Victivallaceae   Victivallaceae bacterium
11823054 11823054 PRJNA1237347_P_NODE_500530_length_248_cov_0.880000_g493957_i0 PRJNA1237347 500530 248 0.88 2.1824 Lentisphaeria bacterium 2053569 Bacteria Bacteria 102 2.2e-17   NTclustered gi|2189495548|gb|CP091727.1| 2053569 g493957 i0 86.316 3.24596774193548 95 11 38 2 125 218 1429927 1430020 MAG: Lentisphaeria bacterium isolate nC33_lr_bin.207.fa chromosome blastn 805 102 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria       Lentisphaeria bacterium
14374426 14374426 PRJNA1237347_P_NODE_56032_length_985_cov_3.267544_g50750_i0 PRJNA1237347 56032 985 3.267544 32.1853084 uncultured Lentisphaerota bacterium 278095 Bacteria Bacteria 167 3.4200000000000003e-36   NTclustered gi|164653414|gb|EU350875.1| 278095 g50750 i0 79.661 28.0791878172589 236 45 24 3 661 895 670 903 Uncultured Lentisphaerae bacterium clone HAL-T-18 16S ribosomal RNA gene, partial sequence blastn 27658 167 1 Bacteria PVC group Pseudomonadati Lentisphaerota         uncultured Lentisphaerota bacterium
24567880 24567880 PRJNA1237347_P_NODE_358560_length_298_cov_5.071111_g351987_i0 PRJNA1237347 358560 298 5.071111 15.11191078 Lentisphaerae bacterium GWF2_57_35 1798576 Bacteria Bacteria 62 1.29e-8   NR OGV47480.1 1798576 g351987 i0 38.8 0.855704697986577 85 47 85.6 2 1 255 2220 2299 OGV47480.1 MAG: hypothetical protein A2X46_14250 [Lentisphaerae bacterium GWF2_57_35] diamond 255 62 1 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerae bacterium GWF2_57_35
26598185 26598185 PRJNA1237347_P_NODE_521321_length_245_cov_0.895349_g514748_i0 PRJNA1237347 521321 245 0.895349 2.19360505 Lentisphaeria bacterium 2053569 Bacteria Bacteria 58.9 7.2e-9   NR MBO5694326.1 2053569 g514748 i0 71.4 0.428571428571429 35 10 42.9 0 3 107 2 36 MBO5694326.1 sel1 repeat family protein [Lentisphaeria bacterium] diamond 105 58.9 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria       Lentisphaeria bacterium
27073115 27073115 PRJNA1237347_P_NODE_384162_length_286_cov_1.957746_g377589_i0 PRJNA1237347 384162 286 1.957746 5.59915356 Lentisphaeria bacterium 2053569 Bacteria Bacteria 166 2.81e-47   NR MCH2177112.1 2053569 g377589 i0 84 0.986013986013986 94 15 98.6 0 284 3 76 169 MCH2177112.1 IS1182 family transposase [Lentisphaeria bacterium] diamond 282 166 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria       Lentisphaeria bacterium
27294595 27294595 PRJNA1237347_P_NODE_547383_length_242_cov_0.911243_g540810_i0 PRJNA1237347 547383 242 0.911243 2.20520806 Lentisphaerota bacterium 1932692 Bacteria Bacteria 92.8 8.82e-20   NR MEI6420600.1 1932692 g540810 i0 58.8 0.991735537190083 80 32 99.2 1 240 1 136 214 MEI6420600.1 hypothetical protein [Lentisphaerota bacterium] diamond 240 92.8 1 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerota bacterium
27547347 27547347 PRJNA1237347_P_NODE_80444_length_784_cov_1.220816_g74347_i0 PRJNA1237347 80444 784 1.220816 9.57119744 Victivallales bacterium 2212475 Bacteria Bacteria 58.5 1.05e-5   NR MBT7164771.1 2212475 g74347 i0 26.7 0.92984693877551 243 132 89.2 9 83 781 33 239 MBT7164771.1 LamG domain-containing protein [Victivallales bacterium] diamond 729 58.5 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria Victivallales     Victivallales bacterium
27723809 27723809 PRJNA1237347_P_NODE_517424_length_245_cov_2.232558_g510851_i0 PRJNA1237347 517424 245 2.232558 5.4697671 Pseudomonadati 3379134 Bacteria Bacteria 142 3.25e-39   NR OGV20663.1 1798570 g510851 i0 80.2 55.5428571428571 81 16 99.2 0 245 3 142 222 OGV20663.1 MAG: GDP-mannose 4,6-dehydratase [Lentisphaerae bacterium GWF2_38_69] diamond 13608 143 0.993006993006993 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerae bacterium GWF2_38_69
28259960 28259960 PRJNA1237347_P_NODE_363646_length_296_cov_1.376682_g357073_i0 PRJNA1237347 363646 296 1.376682 4.07497872 Bacteria 2 Bacteria Bacteria 59.3 6.94e-8   NR NLK83612.1 1932692 g357073 i0 39.4 1.43918918918919 71 43 72 0 3 215 181 251 NLK83612.1 M48 family metallopeptidase [Lentisphaerota bacterium] diamond 426 59.3 1 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerota bacterium
28525873 28525873 PRJNA1237347_P_NODE_238847_length_386_cov_0.984026_g232274_i0 PRJNA1237347 238847 386 0.984026 3.79834036 Lentisphaerota bacterium 1932692 Bacteria Bacteria 45.1 0.0278   NR NLE68175.1 1932692 g232274 i0 30.8 0.606217616580311 78 52 60.6 1 141 374 253 328 NLE68175.1 hypothetical protein [Lentisphaerota bacterium] diamond 234 45.1 1 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerota bacterium
29315444 29315444 PRJNA1237347_P_NODE_543709_length_242_cov_1.349112_g537136_i0 PRJNA1237347 543709 242 1.349112 3.26485104 Lentisphaerota bacterium 1932692 Bacteria Bacteria 101 8.849999999999999e-23   NR MCX6984188.1 1932692 g537136 i0 64.1 3.79338842975207 78 28 96.7 0 235 2 2 79 MCX6984188.1 phosphoenolpyruvate carboxykinase (GTP) [Lentisphaerota bacterium] diamond 918 101 1 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerota bacterium
29365308 29365308 PRJNA1237347_P_NODE_312349_length_326_cov_0.782609_g305776_i0 PRJNA1237347 312349 326 0.782609 2.55130534 PVC group 1783257 Bacteria Bacteria 117 5.18e-30   NR WP_274149790.1 1658616 g305776 i0 59.8 2.55828220858896 92 36 84.7 1 48 323 55 145 WP_274149790.1 SDR family NAD(P)-dependent oxidoreductase [Lentisphaera profundi] diamond 834 118 0.991525423728814 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria Lentisphaerales Lentisphaeraceae Lentisphaera Lentisphaera profundi
30041771 30041771 PRJNA1237347_P_NODE_7611_length_2853_cov_7.572662_g6550_i0 PRJNA1237347 7611 2853 7.572662 216.04804686 Victivallales bacterium 2212475 Bacteria Bacteria 525 2.209999999999999e-168   NR HJO91876.1 2212475 g6550 i0 38.8 0.833859095688749 793 452 80.8 12 2703 400 8 792 HJO91876.1 hypothetical protein [Victivallales bacterium] diamond 2379 525 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria Victivallales     Victivallales bacterium
30072752 30072752 PRJNA1237347_P_NODE_162152_length_498_cov_1.369412_g155591_i0 PRJNA1237347 162152 498 1.369412 6.81967176 Victivallales bacterium 2212475 Bacteria Bacteria 114 4.61e-26   NR MBT7300281.1 2212475 g155591 i0 38 1.90361445783133 158 93 95.2 3 17 490 308 460 MBT7300281.1 hypothetical protein [Victivallales bacterium] diamond 948 114 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria Victivallales     Victivallales bacterium
30358234 30358234 PRJNA1237347_P_NODE_7612_length_2853_cov_6.657554_g6550_i1 PRJNA1237347 7612 2853 6.657554 189.94001562 Victivallales bacterium 2212475 Bacteria Bacteria 526 1.1199999999999995e-168   NR HJO91876.1 2212475 g6550 i1 38.8 0.833859095688749 793 452 80.8 12 151 2454 8 792 HJO91876.1 hypothetical protein [Victivallales bacterium] diamond 2379 526 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria Victivallales     Victivallales bacterium
30502347 30502347 PRJNA1237347_P_NODE_444833_length_261_cov_1.638298_g438260_i0 PRJNA1237347 444833 261 1.638298 4.27595778 Bacteria 2 Bacteria Bacteria 57 4.54e-7   NR MCK5803933.1 2053569 g438260 i0 47.1 2.55172413793103 51 23 58.6 1 192 40 681 727 MCK5803933.1 thrombospondin type 3 repeat-containing protein [Lentisphaeria bacterium] diamond 666 57.4 0.993031358885017 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria       Lentisphaeria bacterium
30547345 30547345 PRJNA1237347_P_NODE_68673_length_867_cov_1.600756_g62911_i0 PRJNA1237347 68673 867 1.600756 13.87855452 Lentisphaeria bacterium 2053569 Bacteria Bacteria 44.7 0.0344   NR MBR2425346.1 2053569 g62911 i0 38.2 0.190311418685121 55 30 19 1 854 690 12 62 MBR2425346.1 leucine-rich repeat protein [Lentisphaeria bacterium] diamond 165 44.7 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria       Lentisphaeria bacterium
30894929 30894929 PRJNA1237347_P_NODE_474514_length_251_cov_0.865169_g467941_i0 PRJNA1237347 474514 251 0.865169 2.17157419 Lentisphaerota bacterium 1932692 Bacteria Bacteria 65.1 2.89e-10   NR MBM4141967.1 1932692 g467941 i0 39.8 1.9840637450199201 83 46 96.8 2 9 251 151 231 MBM4141967.1 class I SAM-dependent methyltransferase [Lentisphaerota bacterium] diamond 498 65.1 1 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerota bacterium
31083976 31083976 PRJNA1237347_P_NODE_191775_length_446_cov_1.126005_g185203_i0 PRJNA1237347 191775 446 1.126005 5.0219823 Lentisphaeria bacterium 2053569 Bacteria Bacteria 58.2 6.64e-7   NR MCH2176576.1 2053569 g185203 i0 45.7 0.47085201793722 70 29 45.1 2 202 2 13 76 MCH2176576.1 RluA family pseudouridine synthase [Lentisphaeria bacterium] diamond 210 58.2 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria       Lentisphaeria bacterium
31165499 31165499 PRJNA1237347_P_NODE_213635_length_415_cov_1.704678_g207063_i0 PRJNA1237347 213635 415 1.704678 7.0744137 PVC group 1783257 Bacteria Bacteria 50.4 4.55e-4   NR MBE6372044.1 1932692 g207063 i0 29.2 2.33493975903614 130 73 81 4 28 363 138 266 MBE6372044.1 site-specific integrase [Lentisphaerota bacterium] diamond 969 50.4 1 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerota bacterium
31906188 31906188 PRJNA1237347_P_NODE_211397_length_418_cov_1.379710_g204825_i0 PRJNA1237347 211397 418 1.37971 5.7671878 Lentisphaeria bacterium 2053569 Bacteria Bacteria 53.1 4.49e-5   NR MBR7138565.1 2053569 g204825 i0 64.7 0.509569377990431 34 12 24.4 0 10 111 1 34 MBR7138565.1 SEL1-like repeat protein [Lentisphaeria bacterium] diamond 213 53.1 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria       Lentisphaeria bacterium
31906434 31906434 PRJNA1237347_P_NODE_38437_length_1236_cov_2.926053_g34287_i0 PRJNA1237347 38437 1236 2.926053 36.16601508 Lentisphaeraceae bacterium 2461380 Bacteria Bacteria 71.2 2.22e-9   NR MCM8536693.1 2461380 g34287 i0 39.2 0.247572815533981 102 58 24.8 2 252 557 92 189 MCM8536693.1 sel1 repeat family protein [Lentisphaeraceae bacterium] diamond 306 71.2 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria Lentisphaerales Lentisphaeraceae   Lentisphaeraceae bacterium
32064677 32064677 PRJNA1237347_P_NODE_479538_length_250_cov_1.305085_g472965_i0 PRJNA1237347 479538 250 1.305085 3.2627125 Lentisphaerota bacterium 1932692 Bacteria Bacteria 49.3 9.62e-5   NR NLB54426.1 1932692 g472965 i0 47.9 0.576 48 20 57.6 1 195 52 100 142 NLB54426.1 hypothetical protein [Lentisphaerota bacterium] diamond 144 49.3 1 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerota bacterium
32064774 32064774 PRJNA1237347_P_NODE_5498_length_3313_cov_1.899074_g4714_i0 PRJNA1237347 5498 3313 1.899074 62.91632162 Lentisphaeraceae bacterium 2461380 Bacteria Bacteria 113 6e-21   NR MCM8536984.1 2461380 g4714 i0 23.9 0.534258979776637 590 377 51.8 18 2644 929 3293 3828 MCM8536984.1 Ig-like domain-containing protein [Lentisphaeraceae bacterium] diamond 1770 113 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria Lentisphaerales Lentisphaeraceae   Lentisphaeraceae bacterium
32759945 32759945 PRJNA1237347_P_NODE_470040_length_251_cov_2.269663_g463467_i0 PRJNA1237347 470040 251 2.269663 5.69685413 Lentisphaeria bacterium 2053569 Bacteria Bacteria 49.3 4.23e-5   NR MBO5694326.1 2053569 g463467 i0 61.1 1.33864541832669 36 14 43 0 250 143 5 40 MBO5694326.1 sel1 repeat family protein [Lentisphaeria bacterium] diamond 336 49.3 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria       Lentisphaeria bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;