RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

1 row where bioproject = "PRJNA1237347", tax_clade = "Candidatus Thermofonsia Clade 3" and tax_kingdom = "Bacillati"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Bacillati · 1 ✖

tax_clade 1

  • Candidatus Thermofonsia Clade 3 · 1 ✖

bioproject 1

  • PRJNA1237347 · 1 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4172345 4172345 PRJNA1237347_P_NODE_547064_length_242_cov_0.911243_g540491_i0 PRJNA1237347 547064 242 0.911243 2.20520806 Candidatus Roseilinea sp. 2838777 Bacteria Bacteria 313 9.06e-81   NTclustered gi|2314722916|dbj|AP024676.1| 2838777 g540491 i0 90.083 103.545454545455 242 23 100 1 1 242 3495586 3495346 MAG: Candidatus Roseilinea sp. KatS3mg053 DNA, complete genome blastn 25058 313 1 Bacteria Candidatus Thermofonsia Clade 3 Bacillati Chloroflexota Candidatus Thermofontia     Candidatus Roseilinea Candidatus Roseilinea sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;