RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA1237347" and tax_clade = "Candidatus Halobeggiatoa"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Candidatus Halobeggiatoa · 1 ✖

bioproject 1

  • PRJNA1237347 · 1 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26597970 26597970 PRJNA1237347_P_NODE_352641_length_302_cov_1.008734_g346068_i0 PRJNA1237347 352641 302 1.008734 3.04637668 Candidatus Halobeggiatoa sp. HSG11 3055495 Bacteria Bacteria 86.7 1.65e-17   NR MDM8565238.1 3055495 g346068 i0 45.9 0.973509933774834 98 53 97.4 0 295 2 197 294 MDM8565238.1 ATP-binding protein [Candidatus Halobeggiatoa sp. HSG11] diamond 294 86.7 1 Bacteria Candidatus Halobeggiatoa Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Thiotrichaceae   Candidatus Halobeggiatoa sp. HSG11

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;