RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1237347", tax_clade = "Acidobacteriota subdivision 22" and tax_kingdom = "Pseudomonadati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pseudomonadati · 3 ✖

tax_clade 1

  • Acidobacteriota subdivision 22 · 3 ✖

bioproject 1

  • PRJNA1237347 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16913812 16913812 PRJNA1237347_P_NODE_120154_length_605_cov_3.684211_g113646_i0 PRJNA1237347 120154 605 3.684211 22.28947655 Acidobacteria bacterium Mor1 1660251 Bacteria Bacteria 87.9 1.64e-12   NTclustered gi|1037405666|gb|CP011806.1| 1660251 g113646 i0 82.524 0.441322314049587 103 14 17 4 245 345 4768517 4768617 Acidobacteria bacterium Mor1 chromosome blastn 267 87.9 1 Bacteria Acidobacteriota subdivision 22 Pseudomonadati Acidobacteriota         Acidobacteria bacterium Mor1
16922468 16922468 PRJNA1237347_P_NODE_551874_length_241_cov_1.375000_g545301_i0 PRJNA1237347 551874 241 1.375 3.31375 Acidobacteria bacterium Mor1 1660251 Bacteria Bacteria 143 1.2499999999999998e-29   NTclustered gi|1037405666|gb|CP011806.1| 1660251 g545301 i0 92.079 0.75103734439834 101 8 42 0 141 241 2886104 2886204 Acidobacteria bacterium Mor1 chromosome blastn 181 143 1 Bacteria Acidobacteriota subdivision 22 Pseudomonadati Acidobacteriota         Acidobacteria bacterium Mor1
19470946 19470946 PRJNA1237347_P_NODE_528736_length_244_cov_0.900585_g522163_i0 PRJNA1237347 528736 244 0.900585 2.1974274 Acidobacteria bacterium Mor1 1660251 Bacteria Bacteria 195 3.46e-45   NTclustered gi|1037405666|gb|CP011806.1| 1660251 g522163 i0 82.87 28.2581967213115 216 37 89 0 5 220 5557107 5556892 Acidobacteria bacterium Mor1 chromosome blastn 6895 195 1 Bacteria Acidobacteriota subdivision 22 Pseudomonadati Acidobacteriota         Acidobacteria bacterium Mor1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;