RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1233465" and tax_phylum = "Candidatus Ratteibacteria"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Ratteibacteria · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1233465 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
32932469 32932469 PRJNA1233465b_S_NODE_381233_length_156_cov_2.383178_g379548_i0 PRJNA1233465 381233 156 2.383178 3.71775768 Candidatus Ratteibacteria bacterium 3018269 Bacteria Bacteria 86.3 1.6e-19   NR MFN4228208.1 3018269 g379548 i0 89.4 0.903846153846154 47 5 90.4 0 1 141 78 124 MFN4228208.1 hypothetical protein [Candidatus Ratteibacteria bacterium] diamond 141 86.3 1 Bacteria Bacteria candidate phyla   Candidatus Ratteibacteria         Candidatus Ratteibacteria bacterium
33017087 33017087 PRJNA1233465a_S_NODE_205884_length_171_cov_1.540984_g204610_i0 PRJNA1233465 205884 171 1.540984 2.63508264 Candidatus Ratteibacteria bacterium 3018269 Bacteria Bacteria 46.2 3.35e-4   NR MFA5393064.1 3018269 g204610 i0 55.6 0.631578947368421 36 16 63.2 0 3 110 80 115 MFA5393064.1 dUTP diphosphatase [Candidatus Ratteibacteria bacterium] diamond 108 46.2 1 Bacteria Bacteria candidate phyla   Candidatus Ratteibacteria         Candidatus Ratteibacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;